Project measure / variable:   Jaxpheno5   bw10

ID, description, units MPD:23008   bw10   body weight   [g]  at age 10 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 10wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 10 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means21.1   g 26.4   g
Median of the strain means21.1   g 26.3   g
SD of the strain means± 1.13 ± 1.68
Coefficient of variation (CV)0.0534 0.0635
Min–max range of strain means19.6   –   23.7   g 24.5   –   30.5   g
Mean sample size per strain89.1   mice 92.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5096.5705 5096.5705 1750.7882 < 0.0001
strain 6 370.5572 61.7595 21.2158 < 0.0001
sex:strain 6 143.9015 23.9836 8.2389 < 0.0001
Residuals 706 2055.1765 2.911


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 21.1 1.6   157 0.128 0.076 0.0
A/J m 24.5 2.4   174 0.182 0.098 -1.13
B6D2F1/J f 21.3 1.95   31 0.351 0.0916 17.3, 26.7 0.18
B6D2F1/J m 26.8 1.75   28 0.33 0.0651 23.3, 30.9 0.24
B6.SJL-Ptprca Pepcb/BoyJ f 20.6 1.6   104 0.157 0.078 -0.44
B6.SJL-Ptprca Pepcb/BoyJ m 26.6 1.8   114 0.169 0.068 0.13
BALB/cByJ f 21.1 1.49   58 0.196 0.0708 18.7, 24.9 0.0
BALB/cByJ m 25.3 1.37   59 0.178 0.0539 21.5, 28.6 -0.65
C57BL/6J f 19.6 1.55   108 0.149 0.0789 15.1, 25.5 -1.33
C57BL/6J m 26.0 1.7   104 0.167 0.0655 22.3, 32.6 -0.23
CBA/J f 21.2 2.16   56 0.289 0.102 15.5, 26.3 0.09
CBA/J m 25.5 1.89   66 0.232 0.074 21.1, 29.8 -0.53
DBA/2J f 20.1 1.7   30 0.311 0.0849 14.7, 23.1 -0.89
DBA/2J m 25.0 1.82   30 0.331 0.0726 20.7, 29.4 -0.83
NOD.CB17-Prkdcscid/J f 20.4 1.2   80 0.134 0.059 -0.62
NOD.CB17-Prkdcscid/J m 26.6 1.9   77 0.217 0.071 0.13
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 23.7 1.7   197 0.121 0.072 2.31
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 30.5 2.2   200 0.156 0.072 2.45
NOD/ShiLtJ f 21.9 1.4   119 0.128 0.064 0.71
NOD/ShiLtJ m 27.1 1.7   116 0.158 0.063 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 21.3419354839 0.306437113 21.9435726034 20.7402983644
B6D2F1/J m 26.8107142857 0.3224357539 27.4437620138 26.1776665576
BALB/cByJ f 21.0637931034 0.2240310489 21.5036399406 20.6239462663
BALB/cByJ m 25.3305084746 0.222124367 25.7666118663 24.8944050828
C57BL/6J f 19.6324074074 0.1641762499 19.9547395333 19.3100752816
C57BL/6J m 25.9721153846 0.1673036976 26.3005877217 25.6436430475
CBA/J f 21.2464285714 0.2279965081 21.6940609128 20.7987962301
CBA/J m 25.4924242424 0.2100149645 25.9047528832 25.0800956016
DBA/2J f 20.07 0.3115025324 20.6815822084 19.4584177916
DBA/2J m 25.01 0.3115025324 25.6215822084 24.3984177916
NOD.CB17-Prkdcscid/J f 21.64 0.381511129 22.3890321732 20.8909678268
NOD.CB17-Prkdcscid/J m 28.135 0.381511129 28.8840321732 27.3859678268
NOD/ShiLtJ f 21.62 0.2116242981 22.0354882935 21.2045117065
NOD/ShiLtJ m 27.4088888889 0.2543407527 27.908243671 26.9095341067


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 24.0763248848 0.2224120723 24.5129931369 23.6396566327
BALB/cByJ both 23.197150789 0.1577412005 23.5068487905 22.8874527875
C57BL/6J both 22.802261396 0.1172010753 23.0323657613 22.5721570308
CBA/J both 23.3694264069 0.1549908812 23.6737246246 23.0651281893
DBA/2J both 22.54 0.220265553 22.9724539268 22.1075460732
NOD.CB17-Prkdcscid/J both 24.8875 0.2697691064 25.417145729 24.357854271
NOD/ShiLtJ both 24.5144444444 0.1654343238 24.8392465844 24.1896423045




  GWAS USING LINEAR MIXED MODELS