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Project measure / variable:   Jaxpheno5   bw06

ID, description, units MPD:23004   bw06   body weight   [g]  at age 6 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 6wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 6 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means18.2   g 21.8   g
Median of the strain means18.2   g 21.6   g
SD of the strain means± 1.44 ± 2.14
Coefficient of variation (CV)0.0792 0.0982
Min–max range of strain means15.8   –   21.1   g 18.3   –   26.0   g
Mean sample size per strain91.8   mice 95.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2487.8218 2487.8218 1197.0252 < 0.0001
strain 6 804.2265 134.0378 64.4928 < 0.0001
sex:strain 6 130.98 21.83 10.5036 < 0.0001
Residuals 721 1498.481 2.0783


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 17.4 1.3   158 0.103 0.075 -0.54
A/J m 20.0 1.9   179 0.142 0.095 -0.83
B6D2F1/J f 18.3 1.31   31 0.235 0.0714 15.4, 21.3 0.09
B6D2F1/J m 22.5 1.74   28 0.328 0.0771 16.8, 26.4 0.34
B6.SJL-Ptprca Pepcb/BoyJ f 18.5 1.2   119 0.11 0.065 0.23
B6.SJL-Ptprca Pepcb/BoyJ m 21.9 1.6   117 0.148 0.073 0.06
BALB/cByJ f 17.9 1.2   60 0.155 0.0671 15.3, 20.8 -0.19
BALB/cByJ m 20.8 1.35   59 0.176 0.065 17.7, 24.2 -0.45
C57BL/6J f 16.7 1.31   110 0.125 0.0787 13.5, 19.8 -1.02
C57BL/6J m 20.4 1.43   105 0.14 0.0703 16.3, 25.9 -0.64
CBA/J f 18.1 1.3   56 0.174 0.0721 15.3, 20.7 -0.05
CBA/J m 21.3 1.35   76 0.154 0.0632 17.7, 25.3 -0.22
DBA/2J f 15.8 1.65   30 0.302 0.105 11.7, 18.9 -1.65
DBA/2J m 18.3 2.26   30 0.413 0.123 12.7, 23.0 -1.62
NOD.CB17-Prkdcscid/J f 18.6 1.4   80 0.157 0.075 0.3
NOD.CB17-Prkdcscid/J m 23.0 1.8   79 0.203 0.078 0.58
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 21.1 1.6   198 0.114 0.076 2.04
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 26.0 1.7   200 0.12 0.065 1.98
NOD/ShiLtJ f 19.3 1.3   120 0.119 0.067 0.79
NOD/ShiLtJ m 23.5 1.5   119 0.138 0.064 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 18.3064516129 0.2589268806 18.8147923157 17.7981109101
B6D2F1/J m 22.5142857143 0.2724450807 23.049166154 21.9794052745
BALB/cByJ f 17.945 0.1861154219 18.3103929021 17.5796070979
BALB/cByJ m 20.8118644068 0.187686044 21.180340848 20.4433879656
C57BL/6J f 16.6527272727 0.1374553486 16.9225878154 16.38286673
C57BL/6J m 20.3971428571 0.1406900347 20.6733539285 20.1209317858
CBA/J f 18.0910714286 0.192647764 18.4692890146 17.7128538425
CBA/J m 21.3157894737 0.1653678919 21.640449587 20.9911293604
DBA/2J f 15.76 0.2632069538 16.2767435978 15.2432564022
DBA/2J m 18.35 0.2632069538 18.8667435978 17.8332564022
NOD.CB17-Prkdcscid/J f 18.42 0.3223613667 19.0528790712 17.7871209288
NOD.CB17-Prkdcscid/J m 22.975 0.3223613667 23.6078790712 22.3421209288
NOD/ShiLtJ f 18.1369230769 0.1788139134 18.4879812219 17.7858649319
NOD/ShiLtJ m 23.5 0.2149075778 23.9219193808 23.0780806192


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 20.4103686636 0.1879291432 20.7793223717 20.0414149555
BALB/cByJ both 19.3784322034 0.1321599423 19.6378964883 19.1189679185
C57BL/6J both 18.5249350649 0.0983458931 18.7180135907 18.3318565392
CBA/J both 19.7034304511 0.1269445752 19.9526556162 19.4542052861
DBA/2J both 17.055 0.1861154219 17.4203929021 16.6896070979
NOD.CB17-Prkdcscid/J both 20.6975 0.2279439084 21.1450130829 20.2499869171
NOD/ShiLtJ both 20.8184615385 0.1397852662 21.0928963144 20.5440267625




  GWAS USING LINEAR MIXED MODELS