Project measure / variable:   Jaxpheno5   bw05

ID, description, units MPD:23003   bw05   body weight   [g]  at age 5 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 5wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 5 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means17.1   g 20.1   g
Median of the strain means17.2   g 19.8   g
SD of the strain means± 1.55 ± 2.37
Coefficient of variation (CV)0.0906 0.118
Min–max range of strain means14.6   –   20.1   g 17.1   –   24.8   g
Mean sample size per strain91.9   mice 95.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1418.3585 1418.3585 730.1513 < 0.0001
strain 6 1205.5358 200.9226 103.4322 < 0.0001
sex:strain 6 152.0318 25.3386 13.044 < 0.0001
Residuals 721 1400.5816 1.9426


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 16.0 1.3   158 0.103 0.081 -0.73
A/J m 17.8 1.8   179 0.135 0.101 -0.95
B6D2F1/J f 17.3 1.27   31 0.227 0.0731 14.1, 19.9 0.1
B6D2F1/J m 19.7 1.69   28 0.319 0.0859 14.1, 23.0 -0.15
B6.SJL-Ptprca Pepcb/BoyJ f 17.6 1.2   120 0.11 0.068 0.3
B6.SJL-Ptprca Pepcb/BoyJ m 20.3 1.6   120 0.146 0.079 0.1
BALB/cByJ f 17.1 1.25   60 0.161 0.073 14.8, 19.5 -0.03
BALB/cByJ m 19.1 1.3   59 0.169 0.0678 16.2, 22.2 -0.41
C57BL/6J f 15.5 1.49   110 0.142 0.0963 11.2, 19.2 -1.06
C57BL/6J m 17.9 1.43   105 0.139 0.0796 13.5, 21.4 -0.91
CBA/J f 17.1 1.42   56 0.189 0.0828 14.2, 20.4 -0.03
CBA/J m 19.8 1.27   76 0.145 0.0639 16.9, 22.4 -0.11
DBA/2J f 14.6 1.54   30 0.281 0.106 9.93, 16.9 -1.64
DBA/2J m 17.1 1.77   30 0.323 0.104 12.4, 20.1 -1.25
NOD.CB17-Prkdcscid/J f 17.5 1.4   80 0.157 0.08 0.23
NOD.CB17-Prkdcscid/J m 21.6 1.7   79 0.191 0.079 0.65
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 20.1 1.5   198 0.107 0.075 1.91
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 24.8 2.2   200 0.156 0.089 2.0
NOD/ShiLtJ f 18.6 1.4   120 0.128 0.075 0.94
NOD/ShiLtJ m 22.5 1.6   119 0.147 0.071 1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 17.3096774194 0.250325866 17.8011320971 16.8182227416
B6D2F1/J m 19.6785714286 0.2633950194 20.1956842481 19.161458609
BALB/cByJ f 17.1066666667 0.1799330531 17.4599219735 16.7534113599
BALB/cByJ m 19.1237288136 0.1814515024 19.4799652307 18.7674923965
C57BL/6J f 15.5127272727 0.1328893667 15.7736236072 15.2518309383
C57BL/6J m 17.9219047619 0.1360166032 18.1889406737 17.6548688501
CBA/J f 17.0928571429 0.1862484044 17.4585111242 16.7272031615
CBA/J m 19.8197368421 0.1598747131 20.1336124189 19.5058612653
DBA/2J f 14.5776666667 0.254463764 15.0772451125 14.0780882208
DBA/2J m 17.06 0.254463764 17.5595784459 16.5604215541
NOD.CB17-Prkdcscid/J f 17.59 0.3116531899 18.2018561394 16.9781438606
NOD.CB17-Prkdcscid/J m 21.865 0.3116531899 22.4768561394 21.2531438606
NOD/ShiLtJ f 17.7292307692 0.1728740856 18.0686274898 17.3898340486
NOD/ShiLtJ m 22.4666666667 0.2077687933 22.8745707596 22.0587625737


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 18.494124424 0.1816865264 18.8508222542 18.1374265937
BALB/cByJ both 18.1151977401 0.1277698627 18.366043159 17.8643523212
C57BL/6J both 16.7173160173 0.0950790462 16.9039808744 16.5306511602
CBA/J both 18.4562969925 0.1227277393 18.6972434138 18.2153505712
DBA/2J both 15.8188333333 0.1799330531 16.1720886401 15.4655780265
NOD.CB17-Prkdcscid/J both 19.7275 0.220372084 20.1601476253 19.2948523747
NOD/ShiLtJ both 20.0979487179 0.1351418893 20.3632673391 19.8326300968




  GWAS USING LINEAR MIXED MODELS