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Project measure / variable:   Jaxpheno5   bw03

ID, description, units MPD:23001   bw03   body weight   [g]  at age 3 wks  
Data set, strains Jaxpheno5   inbred   9 strains     sex: both     age: 3wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 3 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means10.5   g 10.8   g
Median of the strain means10.4   g 10.7   g
SD of the strain means± 0.937 ± 1.28
Coefficient of variation (CV)0.0894 0.118
Min–max range of strain means9.57   –   12.6   g 9.31   –   13.3   g
Mean sample size per strain91.0   mice 95.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.8969 4.8969 2.5698 0.1095
strain 5 62.8986 12.5797 6.6017 < 0.0001
sex:strain 5 47.5317 9.5063 4.9888 0.0002
Residuals 519 988.967 1.9055


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 9.7 1.6   160 0.126 0.165 -0.84
A/J m 10.1 1.7   180 0.127 0.168 -0.57
B6D2F1/J f 10.6 1.14   31 0.205 0.108 8.66, 13.3 0.12
B6D2F1/J m 10.0 1.19   28 0.225 0.119 8.14, 12.5 -0.65
B6.SJL-Ptprca Pepcb/BoyJ f 10.4 1.8   120 0.164 0.173 -0.1
B6.SJL-Ptprca Pepcb/BoyJ m 10.7 2.1   120 0.192 0.196 -0.1
BALB/cByJ f 10.1 1.32   70 0.158 0.13 7.22, 13.6 -0.42
BALB/cByJ m 9.86 1.22   60 0.158 0.124 6.89, 13.8 -0.76
CBA/J f 9.84 1.23   56 0.164 0.125 7.35, 13.0 -0.69
CBA/J m 10.7 1.78   76 0.204 0.167 7.35, 14.9 -0.1
DBA/2J f 9.57 1.08   30 0.198 0.113 7.01, 11.5 -0.98
DBA/2J m 9.31 1.05   30 0.192 0.113 6.77, 10.9 -1.19
NOD.CB17-Prkdcscid/J f 10.4 2.4   80 0.268 0.231 -0.1
NOD.CB17-Prkdcscid/J m 11.1 2.6   80 0.291 0.234 0.21
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 12.6 3.0   200 0.212 0.238 2.25
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 13.3 3.4   200 0.24 0.256 1.93
NOD/ShiLtJ f 11.2 2.5   120 0.228 0.223 0.76
NOD/ShiLtJ m 12.4 2.6   120 0.237 0.21 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 10.5929032258 0.2479284612 11.0799699267 10.1058365249
B6D2F1/J m 9.9989285714 0.2608724495 10.5114243242 9.4864328187
BALB/cByJ f 10.1478571429 0.1649902238 10.4719879168 9.8237263689
BALB/cByJ m 9.8585 0.1782098097 10.2086012498 9.5083987502
CBA/J f 9.8408928571 0.1844646781 10.2032820793 9.478503635
CBA/J m 10.6802631579 0.1583435712 10.9913362815 10.3691900343
DBA/2J f 9.5743333333 0.2520267299 10.069451269 9.0792153977
DBA/2J m 9.311 0.2520267299 9.8061179356 8.8158820644
NOD.CB17-Prkdcscid/J f 10.1465 0.3086684449 10.7528931524 9.5401068476
NOD.CB17-Prkdcscid/J m 11.532 0.3086684449 12.1383931524 10.9256068476
NOD/ShiLtJ f 10.3064615385 0.1712184469 10.6428279391 9.9700951378
NOD/ShiLtJ m 10.5573333333 0.2057789633 10.9615954349 10.1530712317


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 10.2959158986 0.1799464898 10.6494289351 9.9424028622
BALB/cByJ both 10.0031785714 0.1214295169 10.2417323619 9.764624781
CBA/J both 10.2605780075 0.1215523591 10.4993731271 10.0217828879
DBA/2J both 9.4426666667 0.1782098097 9.7927679164 9.0925654169
NOD.CB17-Prkdcscid/J both 10.83925 0.2182615505 11.2680347101 10.4104652899
NOD/ShiLtJ both 10.4318974359 0.133847617 10.694847147 10.1689477248




  GWAS USING LINEAR MIXED MODELS