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Project measure / variable:   Jaxpheno4   MCHC16

ID, description, units MPD:22985   MCHC16   mean RBC hemoglobin concentration (MCHC)   [g/dL]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - mean RBC hemoglobin concentration (MCHC) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means33.4   g/dL 32.6   g/dL
Median of the strain means33.5   g/dL 32.1   g/dL
SD of the strain means± 1.28 ± 1.45
Coefficient of variation (CV)0.0383 0.0446
Min–max range of strain means32.0   –   35.9   g/dL 31.1   –   35.4   g/dL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 53.0238 53.0238 47.8207 < 0.0001
strain 8 582.0828 72.7603 65.6206 < 0.0001
sex:strain 8 11.8617 1.4827 1.3372 0.2247
Residuals 286 317.118 1.1088


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 33.5 0.858   16 0.214 0.0256 32.1, 35.0 0.07
B6D2F1/J m 32.1 1.05   10 0.333 0.0329 31.1, 34.9 -0.31
BALB/cByJ f 35.9 0.347   21 0.0757 0.00965 35.3, 36.5 1.95
BALB/cByJ m 35.4 0.408   22 0.087 0.0115 34.8, 36.6 1.96
C3H/HeJ f 34.6 0.469   10 0.148 0.0136 33.8, 35.3 0.93
C3H/HeJ m 34.0 0.457   11 0.138 0.0134 33.4, 34.8 0.99
C57BL/6J f 32.1 0.965   35 0.163 0.03 30.9, 34.8 -1.03
C57BL/6J m 31.1 1.56   30 0.285 0.0502 28.9, 37.4 -1.0
CBA/J f 32.0 0.67   22 0.143 0.021 30.0, 33.0 -1.1
CBA/J m 31.5 0.547   23 0.114 0.0173 30.5, 32.5 -0.73
DBA/2J f 33.6 0.395   11 0.119 0.0117 32.7, 34.1 0.15
DBA/2J m 33.4 0.36   11 0.109 0.0108 32.8, 34.0 0.58
FVB/NJ f 32.5 1.01   10 0.32 0.0311 31.6, 35.1 -0.71
FVB/NJ m 31.2 0.505   11 0.152 0.0162 30.5, 32.0 -0.93
NOD.CB17-Prkdcscid/J f 32.6 0.562   10 0.178 0.0172 31.6, 33.7 -0.63
NOD.CB17-Prkdcscid/J m 31.7 1.95   10 0.618 0.0617 26.2, 33.0 -0.59
NOD/ShiLtJ f 33.9 1.92   20 0.429 0.0566 32.4, 41.7 0.38
NOD/ShiLtJ m 32.6 1.52   21 0.332 0.0466 26.7, 34.1 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 33.5 0.2632 34.0182 32.9818
B6D2F1/J m 32.08 0.333 32.7354 31.4246
BALB/cByJ f 35.9333 0.2298 36.3856 35.4811
BALB/cByJ m 35.3545 0.2245 35.7964 34.9127
C3H/HeJ f 34.58 0.333 35.2354 33.9246
C3H/HeJ m 34.0455 0.3175 34.6704 33.4205
C57BL/6J f 32.1343 0.178 32.4846 31.784
C57BL/6J m 31.05 0.1923 31.4284 30.6716
CBA/J f 32.0 0.2245 32.4419 31.5581
CBA/J m 31.5174 0.2196 31.9496 31.0852
DBA/2J f 33.5818 0.3175 34.2067 32.9569
DBA/2J m 33.3818 0.3175 34.0067 32.7569
FVB/NJ f 32.53 0.333 33.1854 31.8746
FVB/NJ m 31.1545 0.3175 31.7795 30.5296
NOD.CB17-Prkdcscid/J f 32.65 0.333 33.3054 31.9946
NOD.CB17-Prkdcscid/J m 31.67 0.333 32.3254 31.0146
NOD/ShiLtJ f 33.915 0.2355 34.3784 33.4516
NOD/ShiLtJ m 32.5762 0.2298 33.0285 32.1239


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 32.79 0.2122 33.2077 32.3723
BALB/cByJ both 35.6439 0.1606 35.9601 35.3278
C3H/HeJ both 34.3127 0.23 34.7655 33.8599
C57BL/6J both 31.5921 0.131 31.85 31.3343
CBA/J both 31.7587 0.157 32.0677 31.4497
DBA/2J both 33.4818 0.2245 33.9237 33.0399
FVB/NJ both 31.8423 0.23 32.2951 31.3895
NOD.CB17-Prkdcscid/J both 32.16 0.2355 32.6234 31.6966
NOD/ShiLtJ both 33.2456 0.1645 33.5694 32.9218




  GWAS USING LINEAR MIXED MODELS