Project measure / variable:   Jaxpheno1   bone_area16

ID, description, units MPD:22441   bone_area16   whole body bone area, head excluded   [cm2]  at age age 16wks  
Data set, strains Jaxpheno1   inbred   9 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - whole body bone area, head excluded at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means8.71   cm2 9.05   cm2
Median of the strain means8.83   cm2 9.26   cm2
SD of the strain means± 0.707 ± 0.697
Coefficient of variation (CV)0.0812 0.0770
Min–max range of strain means7.38   –   9.73   cm2 7.94   –   10.0   cm2
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.15 3.15 11.4784 0.0009
strain 8 58.4205 7.3026 26.61 < 0.0001
sex:strain 8 1.7847 0.2231 0.8129 0.5925
Residuals 122 33.4804 0.2744


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 9.3 0.42   5 0.188 0.0451 8.93, 9.96 0.83
B6D2F1/J m 9.55 0.368   5 0.165 0.0386 9.13, 9.93 0.72
BALB/cByJ f 8.35 0.382   10 0.121 0.0457 7.55, 9.0 -0.52
BALB/cByJ m 8.34 0.613   10 0.194 0.0735 7.64, 9.4 -1.02
C3H/HeJ f 9.19 0.466   5 0.209 0.0508 8.67, 9.7 0.67
C3H/HeJ m 9.49 0.442   5 0.198 0.0466 9.12, 10.1 0.63
C57BL/6J f 8.04 0.597   15 0.154 0.0743 6.68, 8.82 -0.95
C57BL/6J m 8.45 0.498   15 0.129 0.0589 7.2, 9.18 -0.86
CBA/J f 8.76 0.626   10 0.198 0.0715 7.97, 9.98 0.06
CBA/J m 8.8 0.534   10 0.169 0.0607 7.79, 9.6 -0.36
DBA/2J f 7.38 0.418   5 0.187 0.0566 6.75, 7.77 -1.89
DBA/2J m 7.94 0.337   5 0.151 0.0424 7.66, 8.51 -1.59
FVB/NJ f 8.83 0.67   5 0.3 0.0759 7.72, 9.43 0.16
FVB/NJ m 9.63 0.433   5 0.194 0.045 9.29, 10.3 0.83
NOD.CB17-Prkdcscid/J f 8.85 0.629   5 0.281 0.071 7.91, 9.63 0.19
NOD.CB17-Prkdcscid/J m 9.26 0.327   5 0.146 0.0353 8.81, 9.62 0.3
NOD/ShiLtJ f 9.73 0.462   10 0.146 0.0475 8.94, 10.4 1.44
NOD/ShiLtJ m 10.0 0.641   10 0.203 0.0641 9.15, 10.9 1.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 9.3 0.2343 9.7638 8.8362
B6D2F1/J m 9.55 0.2343 10.0138 9.0862
BALB/cByJ f 8.353 0.1657 8.6809 8.0251
BALB/cByJ m 8.339 0.1657 8.6669 8.0111
C3H/HeJ f 9.188 0.2343 9.6518 8.7242
C3H/HeJ m 9.494 0.2343 9.9578 9.0302
C57BL/6J f 8.036 0.1353 8.3038 7.7682
C57BL/6J m 8.4547 0.1353 8.7224 8.1869
CBA/J f 8.758 0.1657 9.0859 8.4301
CBA/J m 8.798 0.1657 9.1259 8.4701
DBA/2J f 7.378 0.2343 7.8418 6.9142
DBA/2J m 7.942 0.2343 8.4058 7.4782
FVB/NJ f 8.828 0.2343 9.2918 8.3642
FVB/NJ m 9.632 0.2343 10.0958 9.1682
NOD.CB17-Prkdcscid/J f 8.854 0.2343 9.3178 8.3902
NOD.CB17-Prkdcscid/J m 9.264 0.2343 9.7278 8.8002
NOD/ShiLtJ f 9.727 0.1657 10.0549 9.3991
NOD/ShiLtJ m 10.006 0.1657 10.3339 9.6781


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 9.425 0.1657 9.7529 9.0971
BALB/cByJ both 8.346 0.1171 8.5779 8.1141
C3H/HeJ both 9.341 0.1657 9.6689 9.0131
C57BL/6J both 8.2453 0.0956 8.4347 8.056
CBA/J both 8.778 0.1171 9.0099 8.5461
DBA/2J both 7.66 0.1657 7.9879 7.3321
FVB/NJ both 9.23 0.1657 9.5579 8.9021
NOD.CB17-Prkdcscid/J both 9.059 0.1657 9.3869 8.7311
NOD/ShiLtJ both 9.8665 0.1171 10.0984 9.6346




  GWAS USING LINEAR MIXED MODELS