Project measure / variable:   Jaxpheno1   body_BMD8

ID, description, units MPD:22432   body_BMD8   bone mineral density (BMD)   [g/cm2]  at age age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - bone mineral density (BMD) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.0478   g/cm2 0.0484   g/cm2
Median of the strain means0.0483   g/cm2 0.0478   g/cm2
SD of the strain means± 0.00266 ± 0.00344
Coefficient of variation (CV)0.0557 0.0710
Min–max range of strain means0.0443   –   0.0522   g/cm2 0.0426   –   0.0547   g/cm2
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 3.3694 0.0681
strain 10 0.0016 0.0002 31.595 < 0.0001
sex:strain 10 0.0002 0.0 3.7676 0.0001
Residuals 173 0.0009 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.0451 0.00232   5 0.00104 0.0514 0.0425, 0.0476 -1.03
B6.129P2-Apoetm1Unc/J m 0.0458 0.00223   5 0.000998 0.0487 0.0437, 0.0492 -0.77
B6D2F1/J f 0.046 0.00165   5 0.000738 0.0359 0.0433, 0.0476 -0.69
B6D2F1/J m 0.0478 0.0018   5 0.000805 0.0376 0.0462, 0.0507 -0.19
BALB/cByJ f 0.0495 0.00322   10 0.00102 0.065 0.0449, 0.053 0.62
BALB/cByJ m 0.0473 0.00281   10 0.000889 0.0594 0.0417, 0.0516 -0.33
BALB/cJ f 0.0486 0.00155   10 0.00049 0.0319 0.0453, 0.0504 0.29
BALB/cJ m 0.048 0.000924   10 0.000292 0.0192 0.0466, 0.0498 -0.13
C3H/HeJ f 0.0484 0.00262   5 0.00117 0.0542 0.0447, 0.052 0.21
C3H/HeJ m 0.0547 0.00198   5 0.000887 0.0362 0.0528, 0.0579 1.82
C57BL/6J f 0.0443 0.00143   20 0.000321 0.0324 0.0413, 0.0472 -1.33
C57BL/6J m 0.0459 0.00243   15 0.000628 0.053 0.041, 0.0504 -0.74
CBA/J f 0.0513 0.00244   10 0.000771 0.0475 0.0458, 0.0536 1.3
CBA/J m 0.0526 0.00276   15 0.000714 0.0526 0.0483, 0.0558 1.21
DBA/2J f 0.0443 0.00205   10 0.000649 0.0463 0.0416, 0.0479 -1.33
DBA/2J m 0.0426 0.00292   15 0.000754 0.0684 0.0338, 0.046 -1.7
FVB/NJ f 0.0522 0.00134   5 0.000599 0.0257 0.0506, 0.0535 1.64
FVB/NJ m 0.0513 0.0019   5 0.000849 0.037 0.0484, 0.0528 0.83
NOD.CB17-Prkdcscid/J f 0.0483 0.0025   5 0.00112 0.0518 0.0463, 0.0525 0.17
NOD.CB17-Prkdcscid/J m 0.047 0.00186   5 0.000832 0.0395 0.0455, 0.0501 -0.42
NOD/ShiLtJ f 0.0482 0.00247   10 0.000782 0.0513 0.0449, 0.0531 0.14
NOD/ShiLtJ m 0.0499 0.00208   10 0.000658 0.0417 0.047, 0.0524 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.0451 0.001 0.0471 0.0431
B6.129P2-Apoetm1Unc/J m 0.0458 0.001 0.0478 0.0438
B6D2F1/J f 0.046 0.001 0.048 0.044
B6D2F1/J m 0.0478 0.001 0.0498 0.0458
BALB/cByJ f 0.0496 0.0007 0.051 0.0481
BALB/cByJ m 0.0473 0.0007 0.0488 0.0459
BALB/cJ f 0.0486 0.0007 0.0501 0.0472
BALB/cJ m 0.048 0.0007 0.0494 0.0466
C3H/HeJ f 0.0484 0.001 0.0504 0.0464
C3H/HeJ m 0.0547 0.001 0.0567 0.0527
C57BL/6J f 0.0443 0.0005 0.0453 0.0433
C57BL/6J m 0.0459 0.0006 0.0471 0.0447
CBA/J f 0.0513 0.0007 0.0528 0.0499
CBA/J m 0.0526 0.0006 0.0537 0.0514
DBA/2J f 0.0443 0.0007 0.0458 0.0429
DBA/2J m 0.0426 0.0006 0.0438 0.0415
FVB/NJ f 0.0522 0.001 0.0542 0.0502
FVB/NJ m 0.0513 0.001 0.0533 0.0493
NOD.CB17-Prkdcscid/J f 0.0483 0.001 0.0503 0.0463
NOD.CB17-Prkdcscid/J m 0.047 0.001 0.049 0.045
NOD/ShiLtJ f 0.0482 0.0007 0.0496 0.0467
NOD/ShiLtJ m 0.0499 0.0007 0.0513 0.0485


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.0455 0.0007 0.0469 0.044
B6D2F1/J both 0.0469 0.0007 0.0483 0.0455
BALB/cByJ both 0.0484 0.0005 0.0494 0.0474
BALB/cJ both 0.0483 0.0005 0.0493 0.0473
C3H/HeJ both 0.0516 0.0007 0.053 0.0502
C57BL/6J both 0.0451 0.0004 0.0459 0.0443
CBA/J both 0.052 0.0005 0.0529 0.051
DBA/2J both 0.0435 0.0005 0.0444 0.0426
FVB/NJ both 0.0518 0.0007 0.0532 0.0503
NOD.CB17-Prkdcscid/J both 0.0477 0.0007 0.0491 0.0462
NOD/ShiLtJ both 0.049 0.0005 0.05 0.048




  GWAS USING LINEAR MIXED MODELS