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Project measure / variable:   Jaxpheno1   bw8

ID, description, units MPD:22401   bw8   body weight   [g]  at age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - body weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means19.6   g 24.0   g
Median of the strain means19.4   g 24.1   g
SD of the strain means± 1.38 ± 1.43
Coefficient of variation (CV)0.0701 0.0594
Min–max range of strain means17.7   –   22.1   g 21.5   –   25.9   g
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 892.2373 892.2373 292.5155 < 0.0001
strain 10 344.3801 34.438 11.2903 < 0.0001
sex:strain 10 62.1428 6.2143 2.0373 0.0322
Residuals 173 527.6885 3.0502


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 18.8 1.39   5 0.62 0.0738 16.9, 20.2 -0.61
B6.129P2-Apoetm1Unc/J m 22.9 1.53   5 0.684 0.0667 21.2, 25.4 -0.78
B6D2F1/J f 20.7 1.11   5 0.499 0.054 19.8, 22.5 0.77
B6D2F1/J m 25.6 1.14   5 0.51 0.0445 24.4, 27.3 1.12
BALB/cByJ f 19.9 1.88   10 0.594 0.0941 17.4, 22.7 0.18
BALB/cByJ m 23.3 1.3   10 0.412 0.0559 20.3, 25.1 -0.5
BALB/cJ f 19.3 0.965   10 0.305 0.05 17.9, 21.1 -0.25
BALB/cJ m 24.4 1.42   10 0.448 0.0581 22.8, 26.9 0.27
C3H/HeJ f 17.7 1.8   5 0.803 0.101 16.0, 20.7 -1.41
C3H/HeJ m 25.4 1.47   5 0.655 0.0576 24.2, 27.9 0.98
C57BL/6J f 17.7 0.837   20 0.187 0.0473 15.9, 18.9 -1.41
C57BL/6J m 22.2 1.35   15 0.349 0.0608 20.1, 24.7 -1.27
CBA/J f 20.6 2.08   10 0.659 0.101 17.0, 23.1 0.69
CBA/J m 24.9 2.36   15 0.609 0.0947 20.7, 27.7 0.63
DBA/2J f 18.9 1.12   10 0.353 0.0591 17.6, 21.1 -0.54
DBA/2J m 21.5 2.61   15 0.674 0.122 17.3, 26.3 -1.76
FVB/NJ f 19.4 0.837   5 0.374 0.0431 18.7, 20.5 -0.18
FVB/NJ m 24.1 2.16   5 0.968 0.0896 20.4, 25.7 0.06
NOD.CB17-Prkdcscid/J f 21.0 1.61   5 0.719 0.0766 18.7, 22.8 0.98
NOD.CB17-Prkdcscid/J m 23.9 1.76   5 0.789 0.0738 22.1, 26.5 -0.08
NOD/ShiLtJ f 22.1 1.89   10 0.596 0.0855 19.3, 24.8 1.78
NOD/ShiLtJ m 25.9 2.72   10 0.861 0.105 22.9, 30.8 1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 18.8 0.7811 20.3416 17.2584
B6.129P2-Apoetm1Unc/J m 22.92 0.7811 24.4616 21.3784
B6D2F1/J f 20.66 0.7811 22.2016 19.1184
B6D2F1/J m 25.62 0.7811 27.1616 24.0784
BALB/cByJ f 19.94 0.5523 21.0301 18.8499
BALB/cByJ m 23.28 0.5523 24.3701 22.1899
BALB/cJ f 19.31 0.5523 20.4001 18.2199
BALB/cJ m 24.38 0.5523 25.4701 23.2899
C3H/HeJ f 17.7 0.7811 19.2416 16.1584
C3H/HeJ m 25.42 0.7811 26.9616 23.8784
C57BL/6J f 17.705 0.3905 18.4758 16.9342
C57BL/6J m 22.2133 0.4509 23.1034 21.3233
CBA/J f 20.57 0.5523 21.6601 19.4799
CBA/J m 24.9067 0.4509 25.7967 24.0166
DBA/2J f 18.9 0.5523 19.9901 17.8099
DBA/2J m 21.4733 0.4509 22.3634 20.5833
FVB/NJ f 19.4 0.7811 20.9416 17.8584
FVB/NJ m 24.14 0.7811 25.6816 22.5984
NOD.CB17-Prkdcscid/J f 21.0 0.7811 22.5416 19.4584
NOD.CB17-Prkdcscid/J m 23.9 0.7811 25.4416 22.3584
NOD/ShiLtJ f 22.05 0.5523 23.1401 20.9599
NOD/ShiLtJ m 25.94 0.5523 27.0301 24.8499


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 20.86 0.5523 21.9501 19.7699
B6D2F1/J both 23.14 0.5523 24.2301 22.0499
BALB/cByJ both 21.61 0.3905 22.3808 20.8392
BALB/cJ both 21.845 0.3905 22.6158 21.0742
C3H/HeJ both 21.56 0.5523 22.6501 20.4699
C57BL/6J both 19.9592 0.2983 20.5479 19.3705
CBA/J both 22.7383 0.3565 23.442 22.0347
DBA/2J both 20.1867 0.3565 20.8903 19.483
FVB/NJ both 21.77 0.5523 22.8601 20.6799
NOD.CB17-Prkdcscid/J both 22.45 0.5523 23.5401 21.3599
NOD/ShiLtJ both 23.995 0.3905 24.7658 23.2242




  GWAS USING LINEAR MIXED MODELS