Project measure / variable:   Lake2   neg_geo

ID, description, units MPD:21741   neg_geo   characteristic movement with head facing downward on vertical wire grid (score 0-4)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
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  STRAIN COMPARISON PLOT
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Lake2 - characteristic movement with head facing downward on vertical wire grid (score 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.447   score 0.346   score
Median of the strain means0.375   score 0.125   score
SD of the strain means± 0.449 ± 0.391
Coefficient of variation (CV)1.00 1.13
Min–max range of strain means0   –   1.50   score 0   –   1.12   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.6545 0.6545 1.065 0.3028
strain 22 39.7277 1.8058 2.9384 < 0.0001
sex:strain 22 21.7971 0.9908 1.6122 0.0416
Residuals 335 205.8732 0.6145


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.25 0.447   16 0.112 1.79 -0.44
A/J m 0.5 0.756   8 0.267 1.51 0.39
B6.A-Chr1 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr1 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr10 f 0.375 1.06   8 0.375 2.83 -0.16
B6.A-Chr10 m 1.12 1.25   8 0.441 1.11 1.98
B6.A-Chr11 f 0.375 1.06   8 0.375 2.83 -0.16
B6.A-Chr11 m 0.1 0.316   10 0.1 3.16 -0.63
B6.A-Chr12 f 0.375 1.06   8 0.375 2.83 -0.16
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr13 f 1.0 1.41   5 0.632 1.41 1.23
B6.A-Chr13 m 0.857 1.07   7 0.404 1.25 1.31
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr15 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr16 f 0.25 0.707   8 0.25 2.83 -0.44
B6.A-Chr16 m 0.5 0.926   8 0.327 1.85 0.39
B6.A-Chr17 f 1.38 1.19   8 0.42 0.864 2.08
B6.A-Chr17 m 0.5 0.926   8 0.327 1.85 0.39
B6.A-Chr18 f 0.5 1.07   8 0.378 2.14 0.12
B6.A-Chr18 m 0.625 0.916   8 0.324 1.47 0.71
B6.A-Chr19 f 0.5 0.926   8 0.327 1.85 0.12
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr2 f 0.25 0.707   8 0.25 2.83 -0.44
B6.A-Chr2 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr3 f 0.625 1.19   8 0.42 1.9 0.4
B6.A-Chr3 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr4 f 0.714 1.25   7 0.474 1.75 0.59
B6.A-Chr4 m 1.0 0.926   8 0.327 0.926 1.67
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr5 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr6 f 0.375 1.06   8 0.375 2.83 -0.16
B6.A-Chr6 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr7 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr7 m 0.375 1.06   8 0.375 2.83 0.07
B6.A-Chr8 f 0.0 0.0   8 0.0 0.0 -1.0
B6.A-Chr8 m 0.0 0.0   8 0.0 0.0 -0.88
B6.A-Chr9 f 0.25 0.707   8 0.25 2.83 -0.44
B6.A-Chr9 m 0.5 0.926   8 0.327 1.85 0.39
B6.A-ChrX f 1.5 0.926   8 0.327 0.617 2.35
B6.A-ChrX m 0.125 0.354   8 0.125 2.83 -0.56
B6.A-ChrY f 1.25 1.39   8 0.491 1.11 1.79
B6.A-ChrY m 0.75 1.16   8 0.412 1.55 1.03
C57BL/6J f 0.312 0.873   16 0.218 2.79 -0.3
C57BL/6J m 1.0 1.07   8 0.378 1.07 1.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.25 0.196 0.6355 -0.1355
A/J m 0.5 0.2772 1.0452 -0.0452
B6.A-Chr1 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr1 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr10 f 0.375 0.2772 0.9202 -0.1702
B6.A-Chr10 m 1.125 0.2772 1.6702 0.5798
B6.A-Chr11 f 0.375 0.2772 0.9202 -0.1702
B6.A-Chr11 m 0.1 0.2479 0.5876 -0.3876
B6.A-Chr12 f 0.375 0.2772 0.9202 -0.1702
B6.A-Chr12 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr13 f 1.0 0.3506 1.6896 0.3104
B6.A-Chr13 m 0.8571 0.2963 1.44 0.2743
B6.A-Chr14 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr14 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr15 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr15 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr16 f 0.25 0.2772 0.7952 -0.2952
B6.A-Chr16 m 0.5 0.2772 1.0452 -0.0452
B6.A-Chr17 f 1.375 0.2772 1.9202 0.8298
B6.A-Chr17 m 0.5 0.2772 1.0452 -0.0452
B6.A-Chr18 f 0.5 0.2772 1.0452 -0.0452
B6.A-Chr18 m 0.625 0.2772 1.1702 0.0798
B6.A-Chr19 f 0.5 0.2772 1.0452 -0.0452
B6.A-Chr19 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr2 f 0.25 0.2772 0.7952 -0.2952
B6.A-Chr2 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr3 f 0.625 0.2772 1.1702 0.0798
B6.A-Chr3 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr4 f 0.7143 0.2963 1.2971 0.1314
B6.A-Chr4 m 1.0 0.2772 1.5452 0.4548
B6.A-Chr5 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr5 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr6 f 0.375 0.2772 0.9202 -0.1702
B6.A-Chr6 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr7 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr7 m 0.375 0.2772 0.9202 -0.1702
B6.A-Chr8 f 0.0 0.2772 0.5452 -0.5452
B6.A-Chr8 m 0.0 0.2772 0.5452 -0.5452
B6.A-Chr9 f 0.25 0.2772 0.7952 -0.2952
B6.A-Chr9 m 0.5 0.2772 1.0452 -0.0452
B6.A-ChrX f 1.5 0.2772 2.0452 0.9548
B6.A-ChrX m 0.125 0.2772 0.6702 -0.4202
B6.A-ChrY f 1.25 0.2772 1.7952 0.7048
B6.A-ChrY m 0.75 0.2772 1.2952 0.2048
C57BL/6J f 0.3125 0.196 0.698 -0.073
C57BL/6J m 1.0 0.2772 1.5452 0.4548


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.375 0.1697 0.7089 0.0411
B6.A-Chr1 both 0.0 0.196 0.3855 -0.3855
B6.A-Chr10 both 0.75 0.196 1.1355 0.3645
B6.A-Chr11 both 0.2375 0.1859 0.6032 -0.1282
B6.A-Chr12 both 0.1875 0.196 0.573 -0.198
B6.A-Chr13 both 0.9286 0.2295 1.38 0.4771
B6.A-Chr14 both 0.0 0.196 0.3855 -0.3855
B6.A-Chr15 both 0.0 0.196 0.3855 -0.3855
B6.A-Chr16 both 0.375 0.196 0.7605 -0.0105
B6.A-Chr17 both 0.9375 0.196 1.323 0.552
B6.A-Chr18 both 0.5625 0.196 0.948 0.177
B6.A-Chr19 both 0.25 0.196 0.6355 -0.1355
B6.A-Chr2 both 0.125 0.196 0.5105 -0.2605
B6.A-Chr3 both 0.3125 0.196 0.698 -0.073
B6.A-Chr4 both 0.8571 0.2029 1.2562 0.4581
B6.A-Chr5 both 0.0 0.196 0.3855 -0.3855
B6.A-Chr6 both 0.1875 0.196 0.573 -0.198
B6.A-Chr7 both 0.1875 0.196 0.573 -0.198
B6.A-Chr8 both 0.0 0.196 0.3855 -0.3855
B6.A-Chr9 both 0.375 0.196 0.7605 -0.0105
B6.A-ChrX both 0.8125 0.196 1.198 0.427
B6.A-ChrY both 1.0 0.196 1.3855 0.6145
C57BL/6J both 0.6562 0.1697 0.9901 0.3224




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA