Project measure / variable:   Lake2   skin_color

ID, description, units MPD:21712   skin_color   color evaluation of plantar surface and forelimb digits during supine restraint (score 0-2)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Lake2 - color evaluation of plantar surface and forelimb digits during supine restraint (score 0-2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.04   score 1.02   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.144 ± 0.104
Coefficient of variation (CV)0.138 0.102
Min–max range of strain means1.00   –   1.50   score 1.00   –   1.50   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0351 0.0351 1.9578 0.1627
strain 22 2.6296 0.1195 6.6737 < 0.0001
sex:strain 22 2.9573 0.1344 7.5054 < 0.0001
Residuals 335 6.0 0.0179


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.3
A/J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr1 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr1 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 4.59
B6.A-Chr10 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr11 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr11 m 1.0 0.0   10 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr12 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr13 m 1.0 0.0   7 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr14 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr15 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr15 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr16 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr16 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr17 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr18 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr18 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr2 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr2 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr3 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 3.17
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr4 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr5 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr5 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr6 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 3.17
B6.A-Chr6 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr7 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr7 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr8 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr8 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-Chr9 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-Chr9 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-ChrX f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.3
B6.A-ChrY m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.3
C57BL/6J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.0 0.0335 1.0658 0.9342
A/J m 1.0 0.0473 1.0931 0.9069
B6.A-Chr1 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr1 m 1.5 0.0473 1.5931 1.4069
B6.A-Chr10 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr10 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr11 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr11 m 1.0 0.0423 1.0832 0.9168
B6.A-Chr12 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr12 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr13 f 1.0 0.0599 1.1177 0.8823
B6.A-Chr13 m 1.0 0.0506 1.0995 0.9005
B6.A-Chr14 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr14 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr15 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr15 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr16 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr16 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr17 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr17 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr18 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr18 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr19 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr19 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr2 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr2 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr3 f 1.5 0.0473 1.5931 1.4069
B6.A-Chr3 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr4 f 1.0 0.0506 1.0995 0.9005
B6.A-Chr4 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr5 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr5 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr6 f 1.5 0.0473 1.5931 1.4069
B6.A-Chr6 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr7 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr7 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr8 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr8 m 1.0 0.0473 1.0931 0.9069
B6.A-Chr9 f 1.0 0.0473 1.0931 0.9069
B6.A-Chr9 m 1.0 0.0473 1.0931 0.9069
B6.A-ChrX f 1.0 0.0473 1.0931 0.9069
B6.A-ChrX m 1.0 0.0473 1.0931 0.9069
B6.A-ChrY f 1.0 0.0473 1.0931 0.9069
B6.A-ChrY m 1.0 0.0473 1.0931 0.9069
C57BL/6J f 1.0 0.0335 1.0658 0.9342
C57BL/6J m 1.0 0.0473 1.0931 0.9069


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.0 0.029 1.057 0.943
B6.A-Chr1 both 1.25 0.0335 1.3158 1.1842
B6.A-Chr10 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr11 both 1.0 0.0317 1.0624 0.9376
B6.A-Chr12 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr13 both 1.0 0.0392 1.0771 0.9229
B6.A-Chr14 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr15 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr16 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr17 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr18 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr19 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr2 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr3 both 1.25 0.0335 1.3158 1.1842
B6.A-Chr4 both 1.0 0.0346 1.0681 0.9319
B6.A-Chr5 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr6 both 1.25 0.0335 1.3158 1.1842
B6.A-Chr7 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr8 both 1.0 0.0335 1.0658 0.9342
B6.A-Chr9 both 1.0 0.0335 1.0658 0.9342
B6.A-ChrX both 1.0 0.0335 1.0658 0.9342
B6.A-ChrY both 1.0 0.0335 1.0658 0.9342
C57BL/6J both 1.0 0.029 1.057 0.943




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA