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Project measure / variable:   Lake2   defecation_arena

ID, description, units MPD:21708   defecation_arena   number of fecal boli in arena   [n]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Lake2 - number of fecal boli in arena



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.09   n 1.15   n
Median of the strain means1.00   n 1.00   n
SD of the strain means± 0.432 ± 0.628
Coefficient of variation (CV)0.398 0.544
Min–max range of strain means0.250   –   2.00   n 0.375   –   2.25   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3612 0.3612 0.3774 0.5394
strain 22 73.1749 3.3261 3.475 < 0.0001
sex:strain 22 28.3932 1.2906 1.3484 0.138
Residuals 320 306.2893 0.9572


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.88 1.64   8 0.581 0.876 1.84
A/J m 1.88 1.81   8 0.639 0.964 1.16
B6.A-Chr1 f 1.25 0.886   8 0.313 0.709 0.38
B6.A-Chr1 m 2.12 0.991   8 0.35 0.466 1.54
B6.A-Chr10 f 0.625 0.518   8 0.183 0.828 -1.07
B6.A-Chr10 m 0.75 0.707   8 0.25 0.943 -0.64
B6.A-Chr11 f 1.25 1.28   8 0.453 1.03 0.38
B6.A-Chr11 m 1.5 1.08   10 0.342 0.72 0.55
B6.A-Chr12 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 0.68
B6.A-Chr12 m 1.75 1.04   8 0.366 0.591 0.95
B6.A-Chr13 f 0.6 0.548   5 0.245 0.913 -1.13
B6.A-Chr13 m 1.57 0.787   7 0.297 0.501 1.0, 3.0 0.66
B6.A-Chr14 f 0.75 0.707   8 0.25 0.943 -0.78
B6.A-Chr14 m 2.12 1.55   8 0.549 0.731 1.54
B6.A-Chr15 f 0.875 0.991   8 0.35 1.13 -0.49
B6.A-Chr15 m 0.5 0.756   8 0.267 1.51 -1.04
B6.A-Chr16 f 0.75 0.886   8 0.313 1.18 -0.78
B6.A-Chr16 m 0.375 0.744   8 0.263 1.98 -1.24
B6.A-Chr17 f 0.875 0.641   8 0.227 0.732 -0.49
B6.A-Chr17 m 1.0 1.2   8 0.423 1.2 -0.25
B6.A-Chr18 f 0.625 0.744   8 0.263 1.19 -1.07
B6.A-Chr18 m 1.12 1.55   8 0.549 1.38 -0.06
B6.A-Chr19 f 0.25 0.463   8 0.164 1.85 -1.93
B6.A-Chr19 m 0.375 0.744   8 0.263 1.98 -1.24
B6.A-Chr2 f 1.38 1.19   8 0.42 0.864 0.68
B6.A-Chr2 m 0.5 0.756   8 0.267 1.51 -1.04
B6.A-Chr3 f 1.25 0.707   8 0.25 0.566 0.38
B6.A-Chr3 m 0.5 0.756   8 0.267 1.51 -1.04
B6.A-Chr4 f 1.5 0.926   8 0.327 0.617 0.96
B6.A-Chr4 m 2.0 1.31   8 0.463 0.655 1.0, 4.0 1.35
B6.A-Chr5 f 1.0 0.756   8 0.267 0.756 -0.2
B6.A-Chr5 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.25
B6.A-Chr6 f 1.38 0.744   8 0.263 0.541 0.68
B6.A-Chr6 m 0.625 0.744   8 0.263 1.19 -0.84
B6.A-Chr7 f 0.875 1.13   8 0.398 1.29 -0.49
B6.A-Chr7 m 0.875 0.835   8 0.295 0.954 -0.45
B6.A-Chr8 f 1.12 0.641   8 0.227 0.57 0.08
B6.A-Chr8 m 1.12 0.835   8 0.295 0.742 -0.06
B6.A-Chr9 f 0.75 0.886   8 0.313 1.18 -0.78
B6.A-Chr9 m 0.5 0.535   8 0.189 1.07 -1.04
B6.A-ChrX f 1.0 0.756   8 0.267 0.756 -0.2
B6.A-ChrX m 0.75 1.39   8 0.491 1.85 -0.64
B6.A-ChrY f 2.0 1.41   8 0.5 0.707 2.11
B6.A-ChrY m 1.38 1.19   8 0.42 0.864 0.36
C57BL/6J f 1.62 0.744   8 0.263 0.458 1.0, 3.0 1.23
C57BL/6J m 2.25 0.886   8 0.313 0.394 1.0, 4.0 1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.875 0.3459 2.5555 1.1945
A/J m 1.875 0.3459 2.5555 1.1945
B6.A-Chr1 f 1.25 0.3459 1.9305 0.5695
B6.A-Chr1 m 2.125 0.3459 2.8055 1.4445
B6.A-Chr10 f 0.625 0.3459 1.3055 0.0
B6.A-Chr10 m 0.75 0.3459 1.4305 0.0695
B6.A-Chr11 f 1.25 0.3459 1.9305 0.5695
B6.A-Chr11 m 1.5 0.3094 2.1087 0.8913
B6.A-Chr12 f 1.375 0.3459 2.0555 0.6945
B6.A-Chr12 m 1.75 0.3459 2.4305 1.0695
B6.A-Chr13 f 0.6 0.4375 1.4608 0.0
B6.A-Chr13 m 1.5714 0.3698 2.2989 0.8439
B6.A-Chr14 f 0.75 0.3459 1.4305 0.0695
B6.A-Chr14 m 2.125 0.3459 2.8055 1.4445
B6.A-Chr15 f 0.875 0.3459 1.5555 0.1945
B6.A-Chr15 m 0.5 0.3459 1.1805 0.0
B6.A-Chr16 f 0.75 0.3459 1.4305 0.0695
B6.A-Chr16 m 0.375 0.3459 1.0555 0.0
B6.A-Chr17 f 0.875 0.3459 1.5555 0.1945
B6.A-Chr17 m 1.0 0.3459 1.6805 0.3195
B6.A-Chr18 f 0.625 0.3459 1.3055 0.0
B6.A-Chr18 m 1.125 0.3459 1.8055 0.4445
B6.A-Chr19 f 0.25 0.3459 0.9305 0.0
B6.A-Chr19 m 0.375 0.3459 1.0555 0.0
B6.A-Chr2 f 1.375 0.3459 2.0555 0.6945
B6.A-Chr2 m 0.5 0.3459 1.1805 0.0
B6.A-Chr3 f 1.25 0.3459 1.9305 0.5695
B6.A-Chr3 m 0.5 0.3459 1.1805 0.0
B6.A-Chr4 f 1.5 0.3459 2.1805 0.8195
B6.A-Chr4 m 2.0 0.3459 2.6805 1.3195
B6.A-Chr5 f 1.0 0.3459 1.6805 0.3195
B6.A-Chr5 m 1.0 0.3459 1.6805 0.3195
B6.A-Chr6 f 1.375 0.3459 2.0555 0.6945
B6.A-Chr6 m 0.625 0.3459 1.3055 0.0
B6.A-Chr7 f 0.875 0.3459 1.5555 0.1945
B6.A-Chr7 m 0.875 0.3459 1.5555 0.1945
B6.A-Chr8 f 1.125 0.3459 1.8055 0.4445
B6.A-Chr8 m 1.125 0.3459 1.8055 0.4445
B6.A-Chr9 f 0.75 0.3459 1.4305 0.0695
B6.A-Chr9 m 0.5 0.3459 1.1805 0.0
B6.A-ChrX f 1.0 0.3459 1.6805 0.3195
B6.A-ChrX m 0.75 0.3459 1.4305 0.0695
B6.A-ChrY f 2.0 0.3459 2.6805 1.3195
B6.A-ChrY m 1.375 0.3459 2.0555 0.6945
C57BL/6J f 1.625 0.3459 2.3055 0.9445
C57BL/6J m 2.25 0.3459 2.9305 1.5695


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.875 0.2446 2.3562 1.3938
B6.A-Chr1 both 1.6875 0.2446 2.1687 1.2063
B6.A-Chr10 both 0.6875 0.2446 1.1687 0.2063
B6.A-Chr11 both 1.375 0.232 1.8315 0.9185
B6.A-Chr12 both 1.5625 0.2446 2.0437 1.0813
B6.A-Chr13 both 1.0857 0.2864 1.6492 0.5222
B6.A-Chr14 both 1.4375 0.2446 1.9187 0.9563
B6.A-Chr15 both 0.6875 0.2446 1.1687 0.2063
B6.A-Chr16 both 0.5625 0.2446 1.0437 0.0813
B6.A-Chr17 both 0.9375 0.2446 1.4187 0.4563
B6.A-Chr18 both 0.875 0.2446 1.3562 0.3938
B6.A-Chr19 both 0.3125 0.2446 0.7937 0.0
B6.A-Chr2 both 0.9375 0.2446 1.4187 0.4563
B6.A-Chr3 both 0.875 0.2446 1.3562 0.3938
B6.A-Chr4 both 1.75 0.2446 2.2312 1.2688
B6.A-Chr5 both 1.0 0.2446 1.4812 0.5188
B6.A-Chr6 both 1.0 0.2446 1.4812 0.5188
B6.A-Chr7 both 0.875 0.2446 1.3562 0.3938
B6.A-Chr8 both 1.125 0.2446 1.6062 0.6438
B6.A-Chr9 both 0.625 0.2446 1.1062 0.1438
B6.A-ChrX both 0.875 0.2446 1.3562 0.3938
B6.A-ChrY both 1.6875 0.2446 2.1687 1.2063
C57BL/6J both 1.9375 0.2446 2.4187 1.4563




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA