Project measure / variable:   Lake2   transfer_arousal

ID, description, units MPD:21706   transfer_arousal   transfer (view-jar to arena) provoked response (score 0-4)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
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  STRAIN COMPARISON PLOT
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Lake2 - transfer (view-jar to arena) provoked response (score 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.93   score 1.97   score
Median of the strain means2.00   score 2.00   score
SD of the strain means± 0.196 ± 0.124
Coefficient of variation (CV)0.101 0.0632
Min–max range of strain means1.50   –   2.50   score 1.62   –   2.12   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0774 0.0774 0.8589 0.3547
strain 22 8.8854 0.4039 4.4824 < 0.0001
sex:strain 22 3.914 0.1779 1.9745 0.0062
Residuals 336 30.275 0.0901


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.62 0.5   16 0.125 0.308 1.0, 2.0 -1.58
A/J m 1.62 0.518   8 0.183 0.318 1.0, 2.0 -2.79
B6.A-Chr1 f 1.75 0.463   8 0.164 0.265 1.0, 2.0 -0.92
B6.A-Chr1 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr10 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr10 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr11 f 1.75 0.463   8 0.164 0.265 1.0, 2.0 -0.92
B6.A-Chr11 m 2.1 0.316   10 0.1 0.151 2.0, 3.0 1.08
B6.A-Chr12 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr12 m 2.12 0.354   8 0.125 0.166 2.0, 3.0 1.24
B6.A-Chr13 f 2.0 0.0   5 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr13 m 2.0 0.0   7 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr14 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr14 m 1.75 0.463   8 0.164 0.265 1.0, 2.0 -1.74
B6.A-Chr15 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr15 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr16 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr16 m 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.69
B6.A-Chr17 f 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.25
B6.A-Chr17 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr18 f 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.25
B6.A-Chr18 m 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.69
B6.A-Chr19 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr19 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr2 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr2 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr3 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr3 m 2.12 0.354   8 0.125 0.166 2.0, 3.0 1.24
B6.A-Chr4 f 1.62 0.518   8 0.183 0.318 1.0, 2.0 -1.58
B6.A-Chr4 m 1.75 0.463   8 0.164 0.265 1.0, 2.0 -1.74
B6.A-Chr5 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr5 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr6 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 -2.19
B6.A-Chr6 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr7 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr7 m 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.69
B6.A-Chr8 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr8 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-Chr9 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-Chr9 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
B6.A-ChrX f 1.88 0.641   8 0.227 0.342 1.0, 3.0 -0.25
B6.A-ChrX m 2.12 0.354   8 0.125 0.166 2.0, 3.0 1.24
B6.A-ChrY f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.36
B6.A-ChrY m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27
C57BL/6J f 2.5 0.516   16 0.129 0.207 2.0, 3.0 2.91
C57BL/6J m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.625 0.075 1.7726 1.4774
A/J m 1.625 0.1061 1.8338 1.4162
B6.A-Chr1 f 1.75 0.1061 1.9588 1.5412
B6.A-Chr1 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr10 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr10 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr11 f 1.75 0.1061 1.9588 1.5412
B6.A-Chr11 m 2.1 0.0949 2.2867 1.9133
B6.A-Chr12 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr12 m 2.125 0.1061 2.3338 1.9162
B6.A-Chr13 f 2.0 0.1342 2.2641 1.7359
B6.A-Chr13 m 2.0 0.1135 2.2232 1.7768
B6.A-Chr14 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr14 m 1.75 0.1061 1.9588 1.5412
B6.A-Chr15 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr15 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr16 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr16 m 1.875 0.1061 2.0838 1.6662
B6.A-Chr17 f 1.875 0.1061 2.0838 1.6662
B6.A-Chr17 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr18 f 1.875 0.1061 2.0838 1.6662
B6.A-Chr18 m 1.875 0.1061 2.0838 1.6662
B6.A-Chr19 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr19 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr2 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr2 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr3 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr3 m 2.125 0.1061 2.3338 1.9162
B6.A-Chr4 f 1.625 0.1061 1.8338 1.4162
B6.A-Chr4 m 1.75 0.1061 1.9588 1.5412
B6.A-Chr5 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr5 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr6 f 1.5 0.1061 1.7088 1.2912
B6.A-Chr6 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr7 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr7 m 1.875 0.1061 2.0838 1.6662
B6.A-Chr8 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr8 m 2.0 0.1061 2.2088 1.7912
B6.A-Chr9 f 2.0 0.1061 2.2088 1.7912
B6.A-Chr9 m 2.0 0.1061 2.2088 1.7912
B6.A-ChrX f 1.875 0.1061 2.0838 1.6662
B6.A-ChrX m 2.125 0.1061 2.3338 1.9162
B6.A-ChrY f 2.0 0.1061 2.2088 1.7912
B6.A-ChrY m 2.0 0.1061 2.2088 1.7912
C57BL/6J f 2.5 0.075 2.6476 2.3524
C57BL/6J m 2.0 0.1061 2.2088 1.7912


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.625 0.065 1.7528 1.4972
B6.A-Chr1 both 1.875 0.075 2.0226 1.7274
B6.A-Chr10 both 2.0 0.075 2.1476 1.8524
B6.A-Chr11 both 1.925 0.0712 2.065 1.785
B6.A-Chr12 both 2.0625 0.075 2.2101 1.9149
B6.A-Chr13 both 2.0 0.0879 2.1729 1.8271
B6.A-Chr14 both 1.875 0.075 2.0226 1.7274
B6.A-Chr15 both 2.0 0.075 2.1476 1.8524
B6.A-Chr16 both 1.9375 0.075 2.0851 1.7899
B6.A-Chr17 both 1.9375 0.075 2.0851 1.7899
B6.A-Chr18 both 1.875 0.075 2.0226 1.7274
B6.A-Chr19 both 2.0 0.075 2.1476 1.8524
B6.A-Chr2 both 2.0 0.075 2.1476 1.8524
B6.A-Chr3 both 2.0625 0.075 2.2101 1.9149
B6.A-Chr4 both 1.6875 0.075 1.8351 1.5399
B6.A-Chr5 both 2.0 0.075 2.1476 1.8524
B6.A-Chr6 both 1.75 0.075 1.8976 1.6024
B6.A-Chr7 both 1.9375 0.075 2.0851 1.7899
B6.A-Chr8 both 2.0 0.075 2.1476 1.8524
B6.A-Chr9 both 2.0 0.075 2.1476 1.8524
B6.A-ChrX both 2.0 0.075 2.1476 1.8524
B6.A-ChrY both 2.0 0.075 2.1476 1.8524
C57BL/6J both 2.25 0.065 2.3778 2.1222




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA