Project measure / variable:   Crabbe5   dist_base_D2

ID, description, units MPD:19602   dist_base_D2   distance traveled, 1.6mm rod, 6mm space   [cm]  control (day 2)  
ethanol study
Data set, strains Crabbe5   inbred   8 strains     sex: both     age: 8-10wks
Procedure parallel rod floor test
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  STRAIN COMPARISON PLOT
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Crabbe5 - distance traveled, 1.6mm rod, 6mm space control (day 2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains8 strains
Mean of the strain means593   cm 728   cm
Median of the strain means702   cm 754   cm
SD of the strain means± 207 ± 320
Coefficient of variation (CV)0.348 0.439
Min–max range of strain means297   –   821   cm 339   –   1215   cm
Mean sample size per strain5.6   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 280440.1154 280440.1154 3.5691 0.0634
strain 6 4986994.7206 831165.7868 10.5782 < 0.0001
sex:strain 6 557482.6627 92913.7771 1.1825 0.3269
Residuals 64 5028717.95 78573.718


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 312.0 206.0   6 83.9 0.659 68.0, 674.0 -1.36
129S1/SvImJ m 339.0 155.0   6 63.2 0.457 170.0, 532.0 -1.22
A/J f 297.0 113.0   6 46.2 0.38 190.0, 427.0 -1.43
A/J m 342.0 158.0   6 64.4 0.461 151.0, 547.0 -1.21
BALB/cByJ f 708.0 88.6   3 51.2 0.125 617.0, 794.0 0.56
BALB/cByJ m 1215.0 454.0   6 186.0 0.374 633.0, 1774.0 1.52
BTBR T+ Itpr3tf/J f 702.0 432.0   6 176.0 0.615 288.0, 1218.0 0.53
BTBR T+ Itpr3tf/J m 720.0 279.0   5 125.0 0.388 515.0, 1202.0 -0.03
C3H/HeJ f 606.0 98.4   6 40.2 0.162 491.0, 732.0 0.06
C3H/HeJ m 498.0 194.0   6 79.3 0.39 362.0, 883.0 -0.72
C57BL/6J f 703.0 402.0   6 164.0 0.572 395.0, 1464.0 0.53
C57BL/6J m 889.0 363.0   6 148.0 0.408 449.0, 1380.0 0.5
DBA/2J f 821.0 241.0   6 98.2 0.293 544.0, 1115.0 1.11
DBA/2J m 1036.0 272.0   4 136.0 0.263 725.0, 1296.0 0.96
FVB/NJ m 789.0 265.0   6 108.0 0.336 469.0, 1159.0 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 312.0 114.4361 540.6124 83.3876
129S1/SvImJ m 339.1667 114.4361 567.779 110.5543
A/J f 297.3333 114.4361 525.9457 68.721
A/J m 342.1667 114.4361 570.779 113.5543
BALB/cByJ f 708.0 161.8371 1031.3067 384.6933
BALB/cByJ m 1215.1667 114.4361 1443.779 986.5543
BTBR T+ Itpr3tf/J f 702.5 114.4361 931.1124 473.8876
BTBR T+ Itpr3tf/J m 720.4 125.3585 970.8323 469.9677
C3H/HeJ f 605.8333 114.4361 834.4457 377.221
C3H/HeJ m 498.3333 114.4361 726.9457 269.721
C57BL/6J f 702.8333 114.4361 931.4457 474.221
C57BL/6J m 889.1667 114.4361 1117.779 660.5543
DBA/2J f 820.8333 114.4361 1049.4457 592.221
DBA/2J m 1035.75 140.155 1315.7418 755.7582


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 325.5833 80.9185 487.2367 163.93
A/J both 319.75 80.9185 481.4034 158.0966
BALB/cByJ both 961.5833 99.1046 1159.5675 763.5992
BTBR T+ Itpr3tf/J both 711.45 84.8681 880.9935 541.9065
C3H/HeJ both 552.0833 80.9185 713.7367 390.43
C57BL/6J both 796.0 80.9185 957.6534 634.3466
DBA/2J both 928.2917 90.4697 1109.0256 747.5577




  GWAS USING LINEAR MIXED MODELS