Project measure / variable:   Lake3   stretch_attends

ID, description, units MPD:19001   stretch_attends   number of stretch attends in 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - number of stretch attends in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means5.68   n 6.45   n
Median of the strain means4.75   n 5.50   n
SD of the strain means± 3.15 ± 4.48
Coefficient of variation (CV)0.555 0.694
Min–max range of strain means1.50   –   11.2   n 2.12   –   23.1   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 46.137 46.137 1.7412 0.1879
strain 22 4053.2468 184.2385 6.9532 < 0.0001
sex:strain 22 1404.41 63.8368 2.4092 0.0005
Residuals 336 8902.9393 26.4968


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 10.9 9.68   16 2.42 0.89 1.66
A/J m 23.1 13.2   8 4.65 0.569 3.0, 46.0 3.72
B6.A-Chr1 f 9.0 4.78   8 1.69 0.531 3.0, 17.0 1.05
B6.A-Chr1 m 6.75 6.5   8 2.3 0.963 2.0, 21.0 0.07
B6.A-Chr10 f 3.62 1.85   8 0.653 0.509 1.0, 6.0 -0.65
B6.A-Chr10 m 6.5 3.96   8 1.4 0.61 3.0, 15.0 0.01
B6.A-Chr11 f 2.5 2.98   8 1.05 1.19 -1.01
B6.A-Chr11 m 4.2 3.36   10 1.06 0.8 1.0, 12.0 -0.5
B6.A-Chr12 f 4.12 1.73   8 0.611 0.419 2.0, 7.0 -0.49
B6.A-Chr12 m 3.62 2.2   8 0.778 0.607 1.0, 8.0 -0.63
B6.A-Chr13 f 11.0 7.52   5 3.36 0.683 3.0, 23.0 1.69
B6.A-Chr13 m 9.43 4.86   7 1.84 0.515 3.0, 16.0 0.66
B6.A-Chr14 f 6.62 2.33   8 0.822 0.351 2.0, 9.0 0.3
B6.A-Chr14 m 3.5 2.98   8 1.05 0.85 -0.66
B6.A-Chr15 f 10.0 7.27   8 2.57 0.727 2.0, 24.0 1.37
B6.A-Chr15 m 7.0 5.42   8 1.92 0.775 1.0, 17.0 0.12
B6.A-Chr16 f 8.88 6.83   8 2.42 0.77 1.02
B6.A-Chr16 m 10.1 8.1   8 2.86 0.8 1.0, 24.0 0.81
B6.A-Chr17 f 3.88 3.23   8 1.14 0.833 -0.57
B6.A-Chr17 m 2.5 2.0   8 0.707 0.8 -0.88
B6.A-Chr18 f 11.2 7.52   8 2.66 0.668 1.0, 22.0 1.75
B6.A-Chr18 m 9.25 5.73   8 2.02 0.619 1.0, 18.0 0.62
B6.A-Chr19 f 4.38 1.77   8 0.625 0.404 1.0, 6.0 -0.41
B6.A-Chr19 m 5.12 3.36   8 1.19 0.655 1.0, 11.0 -0.3
B6.A-Chr2 f 4.75 4.17   8 1.47 0.877 2.0, 14.0 -0.29
B6.A-Chr2 m 2.25 2.96   8 1.05 1.32 -0.94
B6.A-Chr3 f 2.88 1.55   8 0.549 0.54 1.0, 5.0 -0.89
B6.A-Chr3 m 2.12 0.991   8 0.35 0.466 1.0, 4.0 -0.97
B6.A-Chr4 f 1.88 1.46   8 0.515 0.777 -1.21
B6.A-Chr4 m 10.6 8.23   8 2.91 0.774 2.0, 29.0 0.93
B6.A-Chr5 f 1.88 1.46   8 0.515 0.777 -1.21
B6.A-Chr5 m 6.12 2.53   8 0.895 0.413 3.0, 10.0 -0.07
B6.A-Chr6 f 6.75 4.2   8 1.49 0.622 2.0, 14.0 0.34
B6.A-Chr6 m 6.25 5.34   8 1.89 0.854 1.0, 15.0 -0.05
B6.A-Chr7 f 7.12 5.84   8 2.07 0.82 3.0, 21.0 0.46
B6.A-Chr7 m 4.62 3.02   8 1.07 0.653 -0.41
B6.A-Chr8 f 1.5 1.6   8 0.567 1.07 -1.33
B6.A-Chr8 m 3.12 0.991   8 0.35 0.317 1.0, 4.0 -0.74
B6.A-Chr9 f 3.25 1.83   8 0.648 0.564 1.0, 7.0 -0.77
B6.A-Chr9 m 3.5 2.0   8 0.707 0.571 2.0, 7.0 -0.66
B6.A-ChrX f 4.88 5.08   8 1.8 1.04 -0.25
B6.A-ChrX m 3.75 2.25   8 0.796 0.601 -0.6
B6.A-ChrY f 6.12 6.88   8 2.43 1.12 0.14
B6.A-ChrY m 9.5 8.91   8 3.15 0.938 0.68
C57BL/6J f 3.5 3.56   16 0.89 1.02 -0.69
C57BL/6J m 5.5 3.16   8 1.12 0.575 1.0, 10.0 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 10.875 1.2869 13.4064 8.3436
A/J m 23.125 1.8199 26.7049 19.5451
B6.A-Chr1 f 9.0 1.8199 12.5799 5.4201
B6.A-Chr1 m 6.75 1.8199 10.3299 3.1701
B6.A-Chr10 f 3.625 1.8199 7.2049 0.0451
B6.A-Chr10 m 6.5 1.8199 10.0799 2.9201
B6.A-Chr11 f 2.5 1.8199 6.0799 0.0
B6.A-Chr11 m 4.2 1.6278 7.4019 0.9981
B6.A-Chr12 f 4.125 1.8199 7.7049 0.5451
B6.A-Chr12 m 3.625 1.8199 7.2049 0.0451
B6.A-Chr13 f 11.0 2.302 15.5282 6.4718
B6.A-Chr13 m 9.4286 1.9456 13.2556 5.6015
B6.A-Chr14 f 6.625 1.8199 10.2049 3.0451
B6.A-Chr14 m 3.5 1.8199 7.0799 0.0
B6.A-Chr15 f 10.0 1.8199 13.5799 6.4201
B6.A-Chr15 m 7.0 1.8199 10.5799 3.4201
B6.A-Chr16 f 8.875 1.8199 12.4549 5.2951
B6.A-Chr16 m 10.125 1.8199 13.7049 6.5451
B6.A-Chr17 f 3.875 1.8199 7.4549 0.2951
B6.A-Chr17 m 2.5 1.8199 6.0799 0.0
B6.A-Chr18 f 11.25 1.8199 14.8299 7.6701
B6.A-Chr18 m 9.25 1.8199 12.8299 5.6701
B6.A-Chr19 f 4.375 1.8199 7.9549 0.7951
B6.A-Chr19 m 5.125 1.8199 8.7049 1.5451
B6.A-Chr2 f 4.75 1.8199 8.3299 1.1701
B6.A-Chr2 m 2.25 1.8199 5.8299 0.0
B6.A-Chr3 f 2.875 1.8199 6.4549 0.0
B6.A-Chr3 m 2.125 1.8199 5.7049 0.0
B6.A-Chr4 f 1.875 1.8199 5.4549 0.0
B6.A-Chr4 m 10.625 1.8199 14.2049 7.0451
B6.A-Chr5 f 1.875 1.8199 5.4549 0.0
B6.A-Chr5 m 6.125 1.8199 9.7049 2.5451
B6.A-Chr6 f 6.75 1.8199 10.3299 3.1701
B6.A-Chr6 m 6.25 1.8199 9.8299 2.6701
B6.A-Chr7 f 7.125 1.8199 10.7049 3.5451
B6.A-Chr7 m 4.625 1.8199 8.2049 1.0451
B6.A-Chr8 f 1.5 1.8199 5.0799 0.0
B6.A-Chr8 m 3.125 1.8199 6.7049 0.0
B6.A-Chr9 f 3.25 1.8199 6.8299 0.0
B6.A-Chr9 m 3.5 1.8199 7.0799 0.0
B6.A-ChrX f 4.875 1.8199 8.4549 1.2951
B6.A-ChrX m 3.75 1.8199 7.3299 0.1701
B6.A-ChrY f 6.125 1.8199 9.7049 2.5451
B6.A-ChrY m 9.5 1.8199 13.0799 5.9201
C57BL/6J f 3.5 1.2869 6.0314 0.9686
C57BL/6J m 5.5 1.8199 9.0799 1.9201


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 17.0 1.1145 19.1922 14.8078
B6.A-Chr1 both 7.875 1.2869 10.4064 5.3436
B6.A-Chr10 both 5.0625 1.2869 7.5939 2.5311
B6.A-Chr11 both 3.35 1.2208 5.7515 0.9485
B6.A-Chr12 both 3.875 1.2869 6.4064 1.3436
B6.A-Chr13 both 10.2143 1.507 13.1787 7.2499
B6.A-Chr14 both 5.0625 1.2869 7.5939 2.5311
B6.A-Chr15 both 8.5 1.2869 11.0314 5.9686
B6.A-Chr16 both 9.5 1.2869 12.0314 6.9686
B6.A-Chr17 both 3.1875 1.2869 5.7189 0.6561
B6.A-Chr18 both 10.25 1.2869 12.7814 7.7186
B6.A-Chr19 both 4.75 1.2869 7.2814 2.2186
B6.A-Chr2 both 3.5 1.2869 6.0314 0.9686
B6.A-Chr3 both 2.5 1.2869 5.0314 0.0
B6.A-Chr4 both 6.25 1.2869 8.7814 3.7186
B6.A-Chr5 both 4.0 1.2869 6.5314 1.4686
B6.A-Chr6 both 6.5 1.2869 9.0314 3.9686
B6.A-Chr7 both 5.875 1.2869 8.4064 3.3436
B6.A-Chr8 both 2.3125 1.2869 4.8439 0.0
B6.A-Chr9 both 3.375 1.2869 5.9064 0.8436
B6.A-ChrX both 4.3125 1.2869 6.8439 1.7811
B6.A-ChrY both 7.8125 1.2869 10.3439 5.2811
C57BL/6J both 4.5 1.1145 6.6922 2.3078




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA