Project measure / variable:   Jaxwest1   tissue_mass

ID, description, units MPD:15129   tissue_mass   total tissue mass, head excluded   [g]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxwest1 - total tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means21.2   g 27.4   g
Median of the strain means20.9   g 28.0   g
SD of the strain means± 2.64 ± 2.56
Coefficient of variation (CV)0.124 0.0934
Min–max range of strain means18.4   –   26.0   g 23.9   –   31.2   g
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1042.6854 1042.6854 211.3622 < 0.0001
strain 6 566.7194 94.4532 19.1466 < 0.0001
sex:strain 6 79.2449 13.2075 2.6773 0.019
Residuals 97 478.5173 4.9332


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 18.5 0.776   8 0.275 0.042 17.6, 19.5 -1.04
129S1/SvImJ m 23.9 2.46   8 0.871 0.103 19.5, 27.2 -1.38
A/J f 20.9 2.68   8 0.949 0.128 16.9, 25.0 -0.13
A/J m 25.3 1.52   8 0.536 0.06 23.9, 28.4 -0.83
BALB/cJ f 21.6 1.5   8 0.531 0.0694 19.9, 24.7 0.14
BALB/cJ m 28.6 2.44   8 0.862 0.0851 26.0, 32.9 0.46
C57BL/6J f 20.4 2.13   8 0.752 0.104 17.6, 23.6 -0.32
C57BL/6J m 28.0 3.11   8 1.1 0.111 25.1, 33.8 0.22
DBA/2J f 26.0 3.52   8 1.24 0.135 21.8, 32.3 1.8
DBA/2J m 29.3 2.92   7 1.1 0.0995 26.9, 35.6 0.73
NOD/ShiLtJ f 22.9 1.4   8 0.496 0.0613 21.4, 25.4 0.63
NOD/ShiLtJ m 31.2 2.13   8 0.754 0.0684 28.2, 34.8 1.47
SJL/J f 18.4 0.989   8 0.349 0.0536 17.3, 20.4 -1.08
SJL/J m 25.7 1.61   8 0.571 0.0629 23.4, 27.8 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 18.5 0.7853 20.0585 16.9415
129S1/SvImJ m 23.875 0.7853 25.4335 22.3165
A/J f 20.925 0.7853 22.4835 19.3665
A/J m 25.2625 0.7853 26.821 23.704
BALB/cJ f 21.65 0.7853 23.2085 20.0915
BALB/cJ m 28.6375 0.7853 30.196 27.079
C57BL/6J f 20.3875 0.7853 21.946 18.829
C57BL/6J m 27.9625 0.7853 29.521 26.404
DBA/2J f 25.975 0.7853 27.5335 24.4165
DBA/2J m 29.3143 0.8395 30.9804 27.6481
NOD/ShiLtJ f 22.875 0.7853 24.4335 21.3165
NOD/ShiLtJ m 31.1875 0.7853 32.746 29.629
SJL/J f 18.45 0.7853 20.0085 16.8915
SJL/J m 25.675 0.7853 27.2335 24.1165


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.1875 0.5553 22.2896 20.0854
A/J both 23.0938 0.5553 24.1958 21.9917
BALB/cJ both 25.1438 0.5553 26.2458 24.0417
C57BL/6J both 24.175 0.5553 25.2771 23.0729
DBA/2J both 27.6446 0.5748 28.7854 26.5039
NOD/ShiLtJ both 27.0313 0.5553 28.1333 25.9292
SJL/J both 22.0625 0.5553 23.1646 20.9604




  GWAS USING LINEAR MIXED MODELS