Project measure / variable:   Justice2   RBC

ID, description, units MPD:13205   RBC   red blood cell count (RBC; per volume x 106)   [n/µL]  
Data set, strains Justice2   inbred   16 strains     sex: both     age: 12-16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Justice2 - red blood cell count (RBC; per volume x 106)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested16 strains16 strains
Mean of the strain means9.63   n/µL 9.53   n/µL
Median of the strain means9.57   n/µL 9.52   n/µL
SD of the strain means± 0.612 ± 0.613
Coefficient of variation (CV)0.0635 0.0643
Min–max range of strain means8.76   –   10.6   n/µL 8.65   –   11.1   n/µL
Mean sample size per strain12.6   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.7324 0.7324 5.6236 0.0182
strain 15 130.4413 8.6961 66.7708 < 0.0001
sex:strain 15 10.8106 0.7207 5.5338 < 0.0001
Residuals 365 47.5368 0.1302


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.4 0.243   15 0.0628 0.0235 9.9, 10.7 1.27
129S1/SvImJ m 10.4 0.242   15 0.0624 0.0232 9.9, 10.9 1.42
129S6/SvEvTac f 9.65 0.288   10 0.091 0.0298 9.2, 10.1 0.04
129S6/SvEvTac m 9.42 0.686   10 0.217 0.0728 7.8, 10.2 -0.18
A/J f 9.82 0.352   10 0.111 0.0359 9.3, 10.4 0.32
A/J m 9.61 0.412   8 0.146 0.0429 9.1, 10.3 0.13
BALB/cByJ f 10.0 0.306   15 0.0791 0.0305 9.3, 10.6 0.61
BALB/cByJ m 9.63 0.36   15 0.0929 0.0374 8.8, 10.2 0.17
BALB/cJ f 9.36 0.272   10 0.0859 0.029 8.8, 9.8 -0.44
BALB/cJ m 9.22 0.342   9 0.114 0.0371 8.8, 9.8 -0.5
BTBR T+ Itpr3tf/J f 8.94 0.222   10 0.0702 0.0248 8.6, 9.2 -1.12
BTBR T+ Itpr3tf/J m 9.0 0.236   10 0.0745 0.0262 8.6, 9.4 -0.86
C3HeB/FeJ f 8.89 0.31   15 0.08 0.0349 8.1, 9.49 -1.2
C3HeB/FeJ m 9.07 0.264   15 0.0681 0.0291 8.6, 9.6 -0.75
C3H/HeJ f 8.76 0.263   10 0.0833 0.0301 8.4, 9.1 -1.42
C3H/HeJ m 8.65 0.344   10 0.109 0.0398 8.0, 9.1 -1.43
C57BL/10J f 9.94 0.243   13 0.0675 0.0245 9.4, 10.2 0.51
C57BL/10J m 9.76 0.325   15 0.0838 0.0333 9.3, 10.4 0.38
C57BL/6J f 10.2 0.304   15 0.0786 0.0297 9.7, 10.8 0.94
C57BL/6J m 9.63 0.341   14 0.091 0.0354 9.0, 10.2 0.17
CAST/EiJ f 10.6 0.575   9 0.192 0.0543 9.6, 11.2 1.59
CAST/EiJ m 10.0 0.557   9 0.186 0.0557 9.5, 11.2 0.77
CBA/CaJ f 9.49 0.397   14 0.106 0.0418 8.6, 9.9 -0.22
CBA/CaJ m 9.71 0.336   14 0.0898 0.0346 9.2, 10.3 0.3
CBA/J f 8.94 0.344   10 0.109 0.0385 8.4, 9.5 -1.12
CBA/J m 8.89 0.203   9 0.0676 0.0228 8.7, 9.2 -1.04
DBA/2J f 10.5 0.249   15 0.0643 0.0237 10.0, 10.9 1.43
DBA/2J m 11.1 0.701   14 0.187 0.0632 10.4, 13.1 2.57
FVB/NJ f 9.03 0.375   15 0.0969 0.0416 8.3, 9.5 -0.97
FVB/NJ m 9.31 0.249   15 0.0643 0.0268 8.9, 9.7 -0.36
SJL/J f 9.5 0.359   15 0.0926 0.0377 8.6, 9.9 -0.21
SJL/J m 9.04 0.391   14 0.105 0.0433 8.4, 9.6 -0.8


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.3733 0.0932 10.5566 10.1901
129S1/SvImJ m 10.4133 0.0932 10.5966 10.2301
129S6/SvEvTac f 9.65 0.1141 9.8744 9.4256
129S6/SvEvTac m 9.42 0.1141 9.6444 9.1956
A/J f 9.82 0.1141 10.0444 9.5956
A/J m 9.6125 0.1276 9.8634 9.3616
BALB/cByJ f 10.0333 0.0932 10.2166 9.8501
BALB/cByJ m 9.6333 0.0932 9.8166 9.4501
BALB/cJ f 9.36 0.1141 9.5844 9.1356
BALB/cJ m 9.2222 0.1203 9.4588 8.9857
BTBR T+ Itpr3tf/J f 8.94 0.1141 9.1644 8.7156
BTBR T+ Itpr3tf/J m 9.0 0.1141 9.2244 8.7756
C3HeB/FeJ f 8.8947 0.0932 9.0779 8.7114
C3HeB/FeJ m 9.0667 0.0932 9.2499 8.8834
C3H/HeJ f 8.76 0.1141 8.9844 8.5356
C3H/HeJ m 8.65 0.1141 8.8744 8.4256
C57BL/10J f 9.9385 0.1001 10.1353 9.7416
C57BL/10J m 9.76 0.0932 9.9432 9.5768
C57BL/6J f 10.2467 0.0932 10.4299 10.0634
C57BL/6J m 9.6286 0.0965 9.8182 9.4389
CAST/EiJ f 10.5889 0.1203 10.8254 10.3523
CAST/EiJ m 10.0 0.1203 10.2366 9.7634
CBA/CaJ f 9.4929 0.0965 9.6825 9.3032
CBA/CaJ m 9.7071 0.0965 9.8968 9.5175
CBA/J f 8.94 0.1141 9.1644 8.7156
CBA/J m 8.8889 0.1203 9.1254 8.6523
DBA/2J f 10.5067 0.0932 10.6899 10.3234
DBA/2J m 11.0929 0.0965 11.2825 10.9032
FVB/NJ f 9.0333 0.0932 9.2166 8.8501
FVB/NJ m 9.3067 0.0932 9.4899 9.1234
SJL/J f 9.5 0.0932 9.6832 9.3168
SJL/J m 9.0357 0.0965 9.2254 8.846


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.3933 0.0659 10.5229 10.2638
129S6/SvEvTac both 9.535 0.0807 9.6937 9.3763
A/J both 9.7163 0.0856 9.8846 9.5479
BALB/cByJ both 9.8333 0.0659 9.9629 9.7038
BALB/cJ both 9.2911 0.0829 9.4541 9.1281
BTBR T+ Itpr3tf/J both 8.97 0.0807 9.1287 8.8113
C3HeB/FeJ both 8.9807 0.0659 9.1102 8.8511
C3H/HeJ both 8.705 0.0807 8.8637 8.5463
C57BL/10J both 9.8492 0.0684 9.9837 9.7148
C57BL/6J both 9.9376 0.0671 10.0695 9.8058
CAST/EiJ both 10.2944 0.0851 10.4617 10.1272
CBA/CaJ both 9.6 0.0682 9.7341 9.4659
CBA/J both 8.9144 0.0829 9.0775 8.7514
DBA/2J both 10.7998 0.0671 10.9316 10.6679
FVB/NJ both 9.17 0.0659 9.2996 9.0404
SJL/J both 9.2679 0.0671 9.3997 9.136




  GWAS USING LINEAR MIXED MODELS