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Project measure / variable:   Project1202   Ymaze.TotalArmEntries_3_Ntg_HFD

ID, description, units MPD:130364   Ymaze.TotalArmEntries_3_Ntg_HFD   Ymaze.TotalArmEntries    3 Ntg HFD  
Data set, strains Project1202   F1 AD-BXD   27 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.TotalArmEntries 3 Ntg HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains20 strains
Mean of the strain means28.265   None 22.257   None
Median of the strain means28.0   None 21.709   None
SD of the strain means± 7.2566 ± 7.4894
Coefficient of variation (CV)0.2567 0.3365
Min–max range of strain means13.0   –   42.0   None 1.0   –   31.75   None
Mean sample size per strain2.6   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 248.3923 248.3923 4.1216 0.0483
strain 6 2030.3776 338.3963 5.615 0.0002
sex:strain 6 975.8853 162.6475 2.6988 0.0253
Residuals 45 2711.9889 60.2664


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD124)F1 f 30.0 0.0   1   0.0 0.0 30.0, 30.0 0.24
(B6.5XFAD x BXD124)F1 m 14.0 0.0   1   0.0 0.0 14.0, 14.0 -1.1
(B6.5XFAD x BXD125)F1 m 29.333 1.5275   3 0.88192 0.0521 28.0, 31.0 0.94
(B6.5XFAD x BXD12)F1 f 42.0 4.5826   3 2.6458 0.1091 38.0, 47.0 1.89
(B6.5XFAD x BXD12)F1 m 16.0 0.0   2   0.0 0.0 16.0, 16.0 -0.84
(B6.5XFAD x BXD14)F1-ADtg f 34.0 0.0   1   0.0 0.0 34.0, 34.0 0.79
(B6.5XFAD x BXD14)F1-ADtg m 20.0 7.9582   4 3.9791 0.3979 12.0, 31.0 -0.3
(B6.5XFAD x BXD152)F1 f 24.5 6.364   2   4.5 0.2598 20.0, 29.0 -0.52
(B6.5XFAD x BXD152)F1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -2.84
(B6.5XFAD x BXD161)F1 m 18.0 8.8882   3 5.1316 0.4938 11.0, 28.0 -0.57
(B6.5XFAD x BXD169)F1 f 37.0 0.0   1   0.0 0.0 37.0, 37.0 1.2
(B6.5XFAD x BXD169)F1 m 31.75 3.594   4 1.797 0.1132 29.0, 37.0 1.27
(B6.5XFAD x BXD16)F1-ADtg f 13.0 8.4853   2   6.0 0.6527 7.0, 19.0 -2.1
(B6.5XFAD x BXD19)F1 m 24.25 8.0156   4 4.0078 0.3305 14.0, 32.0 0.27
(B6.5XFAD x BXD28)F1 f 25.75 2.0616   4 1.0308 0.0801 24.0, 28.0 -0.35
(B6.5XFAD x BXD28)F1 m 18.0 5.2915   5 2.3664 0.294 10.0, 24.0 -0.57
(B6.5XFAD x BXD38)F1 f 26.0 0.0   1   0.0 0.0 26.0, 26.0 -0.31
(B6.5XFAD x BXD38)F1 m 30.333 6.4291   3 3.7118 0.2119 23.0, 35.0 1.08
(B6.5XFAD x BXD39)F1 f 28.0 5.6569   2   4.0 0.202 24.0, 32.0 -0.04
(B6.5XFAD x BXD49)F1 m 29.5 2.1213   2   1.5 0.0719 28.0, 31.0 0.97
(B6.5XFAD x BXD50)F1 f 17.0 8.4853   2   6.0 0.4991 11.0, 23.0 -1.55
(B6.5XFAD x BXD55)F1-ADtg f 30.25 20.662   4 10.331 0.683 14.0, 60.0 0.27
(B6.5XFAD x BXD55)F1-ADtg m 19.0 0.0   1   0.0 0.0 19.0, 19.0 -0.43
(B6.5XFAD x BXD61)F1-ADtg f 20.889 8.1616   9 2.7205 0.3907 12.0, 39.0 -1.02
(B6.5XFAD x BXD61)F1-ADtg m 19.0 8.4853   2   6.0 0.4466 13.0, 25.0 -0.43
(B6.5XFAD x BXD62)F1-ADtg f 23.0 0.0   1   0.0 0.0 23.0, 23.0 -0.73
(B6.5XFAD x BXD62)F1-ADtg m 20.25 7.3201   4 3.66 0.3615 14.0, 28.0 -0.27
(B6.5XFAD x BXD66)F1-ADtg f 30.0 0.0   1   0.0 0.0 30.0, 30.0 0.24
(B6.5XFAD x BXD66)F1-ADtg m 20.667 0.57735   3 0.33333 0.0279 20.0, 21.0 -0.21
(B6.5XFAD x BXD68)F1-ADtg f 27.5 0.70711   2   0.5 0.0257 27.0, 28.0 -0.11
(B6.5XFAD x BXD73)F1 f 17.25 4.6458   4 2.3229 0.2693 11.0, 22.0 -1.52
(B6.5XFAD x BXD73)F1 m 22.75 8.6554   4 4.3277 0.3805 15.0, 35.0 0.07
(B6.5XFAD x BXD74)F1 f 23.0 0.0   1   0.0 0.0 23.0, 23.0 -0.73
(B6.5XFAD x BXD74)F1 m 23.0 5.6569   2   4.0 0.246 19.0, 27.0 0.1
(B6.5XFAD x BXD83)F1 f 27.5 0.70711   2   0.5 0.0257 27.0, 28.0 -0.11
(B6.5XFAD x BXD87)F1-ADtg f 35.0 0.0   1   0.0 0.0 35.0, 35.0 0.93
(B6.5XFAD x BXD89)F1-ADtg f 35.5 2.1213   2   1.5 0.0598 34.0, 37.0 1.0
(B6.5XFAD x BXD99)F1-ADtg f 33.5 9.7125   4 4.8563 0.2899 21.0, 43.0 0.72
(B6.5XFAD x BXD99)F1-ADtg m 31.75 2.7538   4 1.3769 0.0867 29.0, 35.0 1.27
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 38.2 10.756   5 4.8104 0.2816 23.0, 48.0 1.37
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 25.8 8.438   5 3.7736 0.3271 16.0, 35.0 0.47
C57BL/6J f 31.25 10.5   4 5.25 0.336 19.0, 40.0 0.41
C57BL/6J m 30.75 9.4296   4 4.7148 0.3067 20.0, 42.0 1.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 42.0 4.4820538355 51.0273198192 32.9726801808
129S1/SvImJ 2 16.0 5.4893724483 27.056163651 4.943836349
A/J 1 38.2 3.4717839723 45.1925318642 31.2074681358
A/J 2 25.8 3.4717839723 32.7925318642 18.8074681358
BALB/cJ 1 25.75 3.8815724827 33.5678882915 17.9321117085
BALB/cJ 2 18.0 3.4717839723 24.9925318642 11.0074681358
BTBR T+ Itpr3tf/J 1 20.8888888889 2.5877149885 26.1008144166 15.6769633612
BTBR T+ Itpr3tf/J 2 19.0 5.4893724483 30.056163651 7.943836349
C3H/HeJ 1 17.25 3.8815724827 25.0678882915 9.4321117085
C3H/HeJ 2 22.75 3.8815724827 30.5678882915 14.9321117085
C57BL/6J 1 31.25 3.8815724827 39.0678882915 23.4321117085
C57BL/6J 2 30.75 3.8815724827 38.5678882915 22.9321117085
CAST/EiJ 1 33.5 3.8815724827 41.3178882915 25.6821117085
CAST/EiJ 2 31.75 3.8815724827 39.5678882915 23.9321117085


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 29.0 3.5433746789 36.1367229489 21.8632770511
A/J both 32.0 2.4549219897 36.9444666988 27.0555333012
BALB/cJ both 21.875 2.6038379793 27.1193988981 16.6306011019
BTBR T+ Itpr3tf/J both 19.9444444444 3.0343647909 26.055968853 13.8329200359
C3H/HeJ both 20.0 2.7446862242 25.5280818255 14.4719181745
C57BL/6J both 31.0 2.7446862242 36.5280818255 25.4719181745
CAST/EiJ both 32.625 2.7446862242 38.1530818255 27.0969181745




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA