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Project measure / variable:   Project1202   Ymaze.Distance_6_5XFAD_HFD

ID, description, units MPD:130323   Ymaze.Distance_6_5XFAD_HFD   Ymaze.Distance    6 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   34 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Distance 6 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested34 strains33 strains
Mean of the strain means11.185   None 9.3172   None
Median of the strain means10.994   None 8.8986   None
SD of the strain means± 2.2567 ± 1.86
Coefficient of variation (CV)0.2018 0.1996
Min–max range of strain means6.8725   –   15.601   None 5.9033   –   12.813   None
Mean sample size per strain8.9   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 698.2892 698.2892 46.4431 < 0.0001
strain 30 1755.8904 58.5297 3.8928 < 0.0001
sex:strain 30 508.9388 16.9646 1.1283 0.2947
Residuals 498 7487.6154 15.0354


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 8.0867 1.8478   3 1.0669 0.2285 5.96, 9.3 -1.37
(B6.5XFAD x BXD113)F1 f 10.228 2.2397   6 0.91434 0.219 8.22, 14.47 -0.42
(B6.5XFAD x BXD113)F1 m 7.81 1.6233   9 0.54112 0.2079 4.87, 10.26 -0.81
(B6.5XFAD x BXD124)F1 f 11.939 3.7263   14 0.99589 0.3121 4.96, 19.4 0.33
(B6.5XFAD x BXD124)F1 m 8.6117 2.8544   12 0.824 0.3315 2.62, 13.84 -0.38
(B6.5XFAD x BXD125)F1 f 12.746 5.8362   9 1.9454 0.4579 5.81, 24.11 0.69
(B6.5XFAD x BXD125)F1 m 11.098 3.7618   5 1.6823 0.339 7.14, 15.64 0.96
(B6.5XFAD x BXD12)F1 f 11.888 6.2768   12 1.8119 0.528 3.51, 21.07 0.31
(B6.5XFAD x BXD12)F1 m 10.86 4.8882   12 1.4111 0.4501 2.73, 20.36 0.83
(B6.5XFAD x BXD14)F1-ADtg f 9.495 0.8146   4 0.4073 0.0858 8.3, 10.06 -0.75
(B6.5XFAD x BXD14)F1-ADtg m 8.9887 3.1474   8 1.1128 0.3501 1.98, 12.55 -0.18
(B6.5XFAD x BXD152)F1 f 7.9312 2.0526   8 0.7257 0.2588 5.12, 11.59 -1.44
(B6.5XFAD x BXD152)F1 m 6.115 1.959   4 0.97949 0.3204 3.69, 8.28 -1.72
(B6.5XFAD x BXD154)F1 f 9.9167 5.3559   9 1.7853 0.5401 1.72, 16.7 -0.56
(B6.5XFAD x BXD154)F1 m 10.945 2.5999   11 0.7839 0.2376 5.41, 14.4 0.88
(B6.5XFAD x BXD161)F1 f 11.105 3.5514   11 1.0708 0.3198 6.71, 16.04 -0.04
(B6.5XFAD x BXD161)F1 m 8.18 1.0863   9 0.36209 0.1328 6.54, 9.75 -0.61
(B6.5XFAD x BXD169)F1 f 12.074 1.1483   5 0.51355 0.0951 10.78, 13.36 0.39
(B6.5XFAD x BXD169)F1 m 7.35 2.5481   7 0.9631 0.3467 4.01, 10.8 -1.06
(B6.5XFAD x BXD16)F1-ADtg f 14.061 5.1168   10 1.6181 0.3639 5.47, 19.44 1.27
(B6.5XFAD x BXD16)F1-ADtg m 10.61 4.6029   8 1.6274 0.4338 4.71, 16.06 0.7
(B6.5XFAD x BXD19)F1 f 9.79 3.8765   7 1.4652 0.396 1.21, 12.77 -0.62
(B6.5XFAD x BXD19)F1 m 8.8986 3.273   7 1.2371 0.3678 4.61, 13.17 -0.23
(B6.5XFAD x BXD28)F1 f 9.1262 2.0765   13 0.57593 0.2275 5.09, 12.05 -0.91
(B6.5XFAD x BXD28)F1 m 5.9033 1.8324   6 0.74808 0.3104 3.12, 8.67 -1.84
(B6.5XFAD x BXD38)F1 f 15.548 5.2476   8 1.8553 0.3375 6.69, 23.02 1.93
(B6.5XFAD x BXD38)F1 m 7.2273 2.4267   11 0.73167 0.3358 2.03, 10.84 -1.12
(B6.5XFAD x BXD39)F1 f 11.456 5.9225   5 2.6486 0.517 1.6, 16.52 0.12
(B6.5XFAD x BXD39)F1 m 8.56 1.4889   7 0.56276 0.1739 6.73, 11.16 -0.41
(B6.5XFAD x BXD50)F1 f 9.8236 3.3824   11 1.0198 0.3443 3.71, 15.07 -0.6
(B6.5XFAD x BXD50)F1 m 8.8156 2.7663   9 0.92209 0.3138 2.91, 12.59 -0.27
(B6.5XFAD x BXD55)F1-ADtg f 14.542 8.4374   12 2.4357 0.5802 2.55, 25.41 1.49
(B6.5XFAD x BXD55)F1-ADtg m 12.019 5.1152   14 1.3671 0.4256 2.72, 19.93 1.45
(B6.5XFAD x BXD60)F1-ADtg f 8.5544 1.9407   9 0.6469 0.2269 4.39, 11.01 -1.17
(B6.5XFAD x BXD60)F1-ADtg m 8.9711 1.3838   9 0.46126 0.1542 6.64, 11.03 -0.19
(B6.5XFAD x BXD61)F1-ADtg f 9.5869 3.2329   13 0.89666 0.3372 3.45, 14.33 -0.71
(B6.5XFAD x BXD61)F1-ADtg m 7.7215 2.9459   13 0.81704 0.3815 3.35, 13.05 -0.86
(B6.5XFAD x BXD62)F1-ADtg f 11.687 4.8388   10 1.5302 0.414 2.12, 18.84 0.22
(B6.5XFAD x BXD62)F1-ADtg m 7.03 2.9828   9 0.99428 0.4243 4.21, 14.32 -1.23
(B6.5XFAD x BXD65)F1-ADtg f 15.437 4.8659   14 1.3005 0.3152 1.89, 22.09 1.88
(B6.5XFAD x BXD65)F1-ADtg m 12.546 3.4389   16 0.85972 0.2741 6.01, 16.95 1.74
(B6.5XFAD x BXD66)F1-ADtg f 12.335 4.2163   12 1.2171 0.3418 4.23, 21.11 0.51
(B6.5XFAD x BXD66)F1-ADtg m 12.159 3.1394   8 1.1099 0.2582 7.15, 17.45 1.53
(B6.5XFAD x BXD68)F1-ADtg f 9.79 6.4699   11 1.9507 0.6609 2.0, 19.96 -0.62
(B6.5XFAD x BXD68)F1-ADtg m 8.353 1.8294   10 0.57852 0.219 5.45, 10.94 -0.52
(B6.5XFAD x BXD73)F1 f 10.395 5.2327   13 1.4513 0.5034 1.08, 16.44 -0.35
(B6.5XFAD x BXD73)F1 m 9.82 0.0   1   0.0 0.0 9.82, 9.82 0.27
(B6.5XFAD x BXD74)F1 f 6.8725 4.3575   8 1.5406 0.634 1.02, 12.46 -1.91
(B6.5XFAD x BXD74)F1 m 8.114 1.7645   5 0.78913 0.2175 5.15, 9.66 -0.65
(B6.5XFAD x BXD75)F1-ADtg f 11.312 3.3633   9 1.1211 0.2973 7.82, 16.18 0.06
(B6.5XFAD x BXD75)F1-ADtg m 8.0662 2.0493   13 0.56836 0.2541 4.18, 11.56 -0.67
(B6.5XFAD x BXD77)F1-ADtg f 10.883 3.164   9 1.0547 0.2907 5.43, 15.86 -0.13
(B6.5XFAD x BXD77)F1-ADtg m 8.556 1.8759   5 0.83893 0.2193 6.63, 10.96 -0.41
(B6.5XFAD x BXD83)F1 f 10.873 1.43   3 0.82562 0.1315 9.74, 12.48 -0.14
(B6.5XFAD x BXD83)F1 m 8.536 1.6987   5 0.75968 0.199 5.71, 10.24 -0.42
(B6.5XFAD x BXD87)F1-ADtg f 11.879 3.2398   8 1.1455 0.2727 7.75, 15.99 0.31
(B6.5XFAD x BXD87)F1-ADtg m 9.575 3.2449   14 0.86723 0.3389 5.71, 15.06 0.14
(B6.5XFAD x BXD89)F1-ADtg f 8.34 0.0   1   0.0 0.0 8.34, 8.34 -1.26
(B6.5XFAD x BXD89)F1-ADtg m 12.745 3.4295   2   2.425 0.2691 10.32, 15.17 1.84
(B6.5XFAD x BXD99)F1-ADtg f 9.8871 5.895   7 2.2281 0.5962 2.19, 16.65 -0.58
(B6.5XFAD x BXD99)F1-ADtg m 10.204 1.3878   7 0.52452 0.136 8.23, 12.41 0.48
(B6.5XFAD x D2)F1-ADtg f 13.373 5.3627   7 2.0269 0.401 6.26, 22.0 0.97
(B6.5XFAD x D2)F1-ADtg m 12.813 2.334   3 1.3475 0.1822 10.37, 15.02 1.88
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 13.726 2.7212   11 0.82048 0.1982 8.98, 18.09 1.13
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 9.758 4.5862   10 1.4503 0.47 1.61, 14.18 0.24
C57BL/6J f 15.601 3.6855   10 1.1654 0.2362 11.14, 20.19 1.96
C57BL/6J m 10.508 3.4442   9 1.1481 0.3278 4.67, 15.36 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 14.5416666667 1.1193514628 16.7409001212 12.3424332121
129S1/SvImJ 2 12.0192857143 1.0363180829 14.0553802506 9.983191178
A/J 1 8.5544444444 1.2925157367 11.0939004984 6.0149883905
A/J 2 8.9711111111 1.2925157367 11.5105671651 6.4316550571
AKR/J 1 10.2283333333 1.5830020197 13.3385191116 7.1181475551
AKR/J 2 7.81 1.2925157367 10.349456054 5.270543946
ALR/LtJ 1 7.93125 1.3709199633 10.6247498945 5.2377501055
ALR/LtJ 2 6.115 1.9387736051 9.924184081 2.305815919
ALS/LtJ 1 9.9166666667 1.2925157367 12.4561227207 7.3772106127
ALS/LtJ 2 10.9445454545 1.169124473 13.2415698826 8.6475210265
BALB/cJ 1 9.5869230769 1.0754380992 11.6998782341 7.4739679197
BALB/cJ 2 7.7215384615 1.0754380992 9.8344936187 5.6085833044
BPH/2J 1 11.1045454545 1.169124473 13.4015698826 8.8075210265
BPH/2J 2 8.18 1.2925157367 10.719456054 5.640543946
BPL/1J 1 12.7455555556 1.2925157367 15.2850116096 10.2060995016
BPL/1J 2 11.098 1.7340918296 14.5050378176 7.6909621824
BPN/3J 1 15.5475 1.3709199633 18.2409998945 12.8540001055
BPN/3J 2 7.2272727273 1.169124473 9.5242971553 4.9302482993
BTBR T+ Itpr3tf/J 1 9.495 1.9387736051 13.304184081 5.685815919
BTBR T+ Itpr3tf/J 2 8.98875 1.3709199633 11.6822498945 6.2952501055
BUB/BnJ 1 12.074 1.7340918296 15.4810378176 8.6669621824
BUB/BnJ 2 7.35 1.4655750878 10.2294725075 4.4705274925
C3H/HeJ 1 11.687 1.2261880919 14.0961395446 9.2778604554
C3H/HeJ 2 7.03 1.2925157367 9.569456054 4.490543946
C57BL/6J 1 15.4371428571 1.0363180829 17.4732373935 13.4010483208
C57BL/6J 2 12.54625 0.9693868025 14.4508420405 10.6416579595
C58/J 1 11.456 1.7340918296 14.8630378176 8.0489621824
C58/J 2 8.56 1.4655750878 11.4394725075 5.6805274925
CAST/EiJ 1 14.061 1.2261880919 16.4701395446 11.6518604554
CAST/EiJ 2 10.61 1.3709199633 13.3034998945 7.9165001055
CBA/J 1 11.8875 1.1193514628 14.0867334546 9.6882665454
CBA/J 2 10.86 1.1193514628 13.0592334546 8.6607665454
CE/J 1 9.79 1.4655750878 12.6694725075 6.9105274925
CE/J 2 8.8985714286 1.4655750878 11.7780439361 6.019098921
DBA/2J 1 12.335 1.1193514628 14.5342334546 10.1357665454
DBA/2J 2 12.15875 1.3709199633 14.8522498945 9.4652501055
FVB/NJ 1 9.79 1.169124473 12.087024428 7.492975572
FVB/NJ 2 8.353 1.2261880919 10.7621395446 5.9438604554
I/LnJ 1 10.8733333333 2.2387029255 15.2718002424 6.4748664242
I/LnJ 2 8.536 1.7340918296 11.9430378176 5.1289621824
KK/HlJ 1 11.9392857143 1.0363180829 13.9753802506 9.903191178
KK/HlJ 2 8.6116666667 1.1193514628 10.8109001212 6.4124332121
LP/J 1 11.3122222222 1.2925157367 13.8516782762 8.7727661682
LP/J 2 8.0661538462 1.0754380992 10.1791090033 5.953198689
MA/MyJ 1 9.8236363636 1.169124473 12.1206607916 7.5266119356
MA/MyJ 2 8.8155555556 1.2925157367 11.3550116096 6.2760995016
NOD/ShiLtJ 1 9.8871428571 1.4655750878 12.7666153647 7.0076703496
NOD/ShiLtJ 2 10.2042857143 1.4655750878 13.0837582218 7.3248132068
NZB/BlNJ 1 10.8833333333 1.2925157367 13.4227893873 8.3438772793
NZB/BlNJ 2 8.556 1.7340918296 11.9630378176 5.1489621824
PL/J 1 13.3728571429 1.4655750878 16.2523296504 10.4933846353
PL/J 2 12.8133333333 2.2387029255 17.2118002424 8.4148664242
RIIIS/J 1 9.1261538462 1.0754380992 11.2391090033 7.013198689
RIIIS/J 2 5.9033333333 1.5830020197 9.0135191116 2.7931475551
SEA/GnJ 1 6.8725 1.3709199633 9.5659998945 4.1790001055
SEA/GnJ 2 8.114 1.7340918296 11.5210378176 4.7069621824
SJL/J 1 13.7263636364 1.169124473 16.0233880644 11.4293392084
SJL/J 2 9.758 1.2261880919 12.1671395446 7.3488604554
SM/J 1 15.601 1.2261880919 18.0101395446 13.1918604554
SM/J 2 10.5077777778 1.2925157367 13.0472338318 7.9683217238
SWR/J 1 11.87875 1.3709199633 14.5722498945 9.1852501055
SWR/J 2 9.575 1.0363180829 11.6110945363 7.5389054637


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 13.2804761905 0.7627094575 14.7790011943 11.7819511866
A/J both 8.7627777778 0.9139466422 10.5584443741 6.9671111815
AKR/J both 9.0191666667 1.0218234099 11.0267829538 7.0115503795
ALR/LtJ both 7.023125 1.1872515148 9.3557643337 4.6904856663
ALS/LtJ both 10.4306060606 0.8714139319 12.1427069829 8.7185051383
BALB/cJ both 8.6542307692 0.7604495727 10.1483156892 7.1601458492
BPH/2J both 9.6422727273 0.8714139319 11.3543736496 7.9301718049
BPL/1J both 11.9217777778 1.0813962506 14.0464391473 9.7971164083
BPN/3J both 11.3873863636 0.9008709091 13.1573625573 9.61741017
BTBR T+ Itpr3tf/J both 9.241875 1.1872515148 11.5745143337 6.9092356663
BUB/BnJ both 9.712 1.1352295816 11.9424298135 7.4815701865
C3H/HeJ both 9.3585 0.8908049964 11.1086993026 7.6083006974
C57BL/6J both 13.9916964286 0.7095184885 15.385715062 12.5976777951
C58/J both 10.008 1.1352295816 12.2384298135 7.7775701865
CAST/EiJ both 12.3355 0.9196410689 14.1423546584 10.5286453416
CBA/J both 11.37375 0.7915010099 12.9288428891 9.8186571109
CE/J both 9.3442857143 1.0363180829 11.3803802506 7.308191178
DBA/2J both 12.246875 0.8849250312 13.9855217057 10.5082282943
FVB/NJ both 9.0715 0.8471111601 10.7358523191 7.4071476809
I/LnJ both 9.7046666667 1.4158800498 12.4865013958 6.9228319375
KK/HlJ both 10.2754761905 0.7627094575 11.7740011943 8.7769511866
LP/J both 9.6891880342 0.8407086348 11.3409610624 8.037415006
MA/MyJ both 9.3195959596 0.8714139319 11.0316968819 7.6074950373
NOD/ShiLtJ both 10.0457142857 1.0363180829 12.081808822 8.0096197494
NZB/BlNJ both 9.7196666667 1.0813962506 11.8443280362 7.5950052971
PL/J both 13.0930952381 1.3378808922 15.7216819816 10.4645084946
RIIIS/J both 7.5147435897 0.9568780617 9.3947592194 5.6347279601
SEA/GnJ both 7.49325 1.1052710097 9.6648190394 5.3216809606
SJL/J both 11.7421818182 0.8471111601 13.4065341373 10.0778294991
SM/J both 13.0543888889 0.8908049964 14.8045881915 11.3041895863
SWR/J both 10.726875 0.8592695611 12.4151154037 9.0386345963


GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA