Project measure / variable:   Project1202   Ymaze.Distance_3_5XFAD_HFD

ID, description, units MPD:130322   Ymaze.Distance_3_5XFAD_HFD   Ymaze.Distance    3 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   30 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Distance 3 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested24 strains23 strains
Mean of the strain means10.966   None 9.3872   None
Median of the strain means10.601   None 9.44   None
SD of the strain means± 3.4038 ± 3.6138
Coefficient of variation (CV)0.3104 0.385
Min–max range of strain means5.34   –   17.955   None 4.2133   –   19.09   None
Mean sample size per strain2.9   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.6048 10.6048 0.8079 0.3717
strain 10 675.9319 67.5932 5.1497 < 0.0001
sex:strain 10 89.2061 8.9206 0.6796 0.7397
Residuals 72 945.0396 13.1256


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD124)F1 m 11.223 1.7953   3 1.0365 0.16 9.97, 13.28 0.51
(B6.5XFAD x BXD125)F1 f 17.955 2.2415   2   1.585 0.1248 16.37, 19.54 2.05
(B6.5XFAD x BXD125)F1 m 12.483 3.2848   3 1.8965 0.2631 10.4, 16.27 0.86
(B6.5XFAD x BXD12)F1 f 15.245 3.7916   6 1.5479 0.2487 8.37, 19.9 1.26
(B6.5XFAD x BXD12)F1 m 16.24 5.9158   5 2.6456 0.3643 8.93, 22.39 1.9
(B6.5XFAD x BXD14)F1-ADtg f 13.655 1.7466   2   1.235 0.1279 12.42, 14.89 0.79
(B6.5XFAD x BXD14)F1-ADtg m 9.8114 2.5308   7 0.95656 0.2579 7.2, 14.31 0.12
(B6.5XFAD x BXD152)F1 f 13.51 0.0   1   0.0 0.0 13.51, 13.51 0.75
(B6.5XFAD x BXD152)F1 m 5.65 0.0   1   0.0 0.0 5.65, 5.65 -1.03
(B6.5XFAD x BXD154)F1 f 10.82 0.0   1   0.0 0.0 10.82, 10.82 -0.04
(B6.5XFAD x BXD161)F1 m 10.48 0.0   1   0.0 0.0 10.48, 10.48 0.3
(B6.5XFAD x BXD169)F1 f 11.24 1.6546   2   1.17 0.1472 10.07, 12.41 0.08
(B6.5XFAD x BXD169)F1 m 9.44 4.8879   4 2.444 0.5178 5.3, 16.52 0.01
(B6.5XFAD x BXD16)F1-ADtg f 6.7367 3.4559   3 1.9953 0.513 3.45, 10.34 -1.24
(B6.5XFAD x BXD16)F1-ADtg m 19.09 0.0   1   0.0 0.0 19.09, 19.09 2.68
(B6.5XFAD x BXD19)F1 m 7.68 0.0   1   0.0 0.0 7.68, 7.68 -0.47
(B6.5XFAD x BXD28)F1 f 10.381 3.1335   7 1.1844 0.3018 6.71, 14.08 -0.17
(B6.5XFAD x BXD28)F1 m 6.0 0.56427   3 0.32578 0.094 5.4, 6.52 -0.94
(B6.5XFAD x BXD31)F1 f 8.18 0.0   1   0.0 0.0 8.18, 8.18 -0.82
(B6.5XFAD x BXD38)F1 m 7.075 1.591   2   1.125 0.2249 5.95, 8.2 -0.64
(B6.5XFAD x BXD39)F1 f 8.56 0.0   1   0.0 0.0 8.56, 8.56 -0.71
(B6.5XFAD x BXD39)F1 m 4.2133 1.5286   3 0.88252 0.3628 3.12, 5.96 -1.43
(B6.5XFAD x BXD49)F1 m 8.4 0.0   1   0.0 0.0 8.4, 8.4 -0.27
(B6.5XFAD x BXD50)F1 f 9.43 0.0   1   0.0 0.0 9.43, 9.43 -0.45
(B6.5XFAD x BXD55)F1-ADtg f 11.742 7.506   4 3.753 0.6392 5.61, 22.19 0.23
(B6.5XFAD x BXD55)F1-ADtg m 11.43 4.0839   4 2.042 0.3573 6.24, 16.1 0.57
(B6.5XFAD x BXD61)F1-ADtg f 7.7878 4.1655   9 1.3885 0.5349 0.9, 13.04 -0.93
(B6.5XFAD x BXD61)F1-ADtg m 8.3733 1.2062   3 0.69643 0.1441 7.2, 9.61 -0.28
(B6.5XFAD x BXD62)F1-ADtg f 5.34 0.0   1   0.0 0.0 5.34, 5.34 -1.65
(B6.5XFAD x BXD62)F1-ADtg m 6.1625 2.1307   4 1.0653 0.3457 4.3, 8.74 -0.89
(B6.5XFAD x BXD66)F1-ADtg f 8.3067 1.8446   3 1.065 0.2221 6.66, 10.3 -0.78
(B6.5XFAD x BXD66)F1-ADtg m 4.42 0.98995   2   0.7 0.224 3.72, 5.12 -1.37
(B6.5XFAD x BXD68)F1-ADtg f 16.25 0.0   1   0.0 0.0 16.25, 16.25 1.55
(B6.5XFAD x BXD73)F1 m 5.526 3.3403   5 1.4938 0.6045 1.78, 9.61 -1.07
(B6.5XFAD x BXD74)F1 f 11.567 0.66715   4 0.33358 0.0577 11.08, 12.55 0.18
(B6.5XFAD x BXD74)F1 m 9.76 0.0   1   0.0 0.0 9.76, 9.76 0.1
(B6.5XFAD x BXD78)F1 f 7.94 0.0   1   0.0 0.0 7.94, 7.94 -0.89
(B6.5XFAD x BXD83)F1 f 7.59 0.0   1   0.0 0.0 7.59, 7.59 -0.99
(B6.5XFAD x BXD87)F1-ADtg f 16.297 2.2768   3 1.3145 0.1397 13.86, 18.37 1.57
(B6.5XFAD x BXD89)F1-ADtg f 8.08 0.0   1   0.0 0.0 8.08, 8.08 -0.85
(B6.5XFAD x BXD89)F1-ADtg m 8.83 3.4648   2   2.45 0.3924 6.38, 11.28 -0.15
(B6.5XFAD x BXD99)F1-ADtg f 14.9 1.251   4 0.6255 0.084 13.82, 16.68 1.16
(B6.5XFAD x BXD99)F1-ADtg m 12.545 1.3485   6 0.55054 0.1075 10.41, 13.96 0.87
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 11.482 0.90695   4 0.45348 0.079 10.64, 12.34 0.15
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 11.58 3.0481   3 1.7598 0.2632 8.09, 13.72 0.61
C57BL/6J f 10.179 3.5019   7 1.3236 0.344 6.44, 15.84 -0.23
C57BL/6J m 9.4925 4.2481   4 2.1241 0.4475 6.7, 15.79 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 7.7877777778 1.2076400551 10.1951642292 5.3803913263
129S1/SvImJ 2 8.3733333333 2.0916939326 12.5430489807 4.203617686
A/J 1 8.3066666667 2.0916939326 12.476382314 4.1369510193
A/J 2 4.42 2.5617914165 9.5268378542 -0.6868378542
BALB/cJ 1 14.9 1.8114600826 18.5110796771 11.2889203229
BALB/cJ 2 12.545 1.4790509639 15.4934342099 9.5965657901
BTBR T+ Itpr3tf/J 1 13.655 2.5617914165 18.7618378542 8.5481621458
BTBR T+ Itpr3tf/J 2 9.8114285714 1.369335111 12.5411482258 7.0817089171
C3H/HeJ 1 15.245 1.4790509639 18.1934342099 12.2965657901
C3H/HeJ 2 16.24 1.6202191533 19.4698478521 13.0101521479
C57BL/6J 1 11.4825 1.8114600826 15.0935796771 7.8714203229
C57BL/6J 2 11.58 2.0916939326 15.7497156473 7.4102843527
CAST/EiJ 1 11.7425 1.8114600826 15.3535796771 8.1314203229
CAST/EiJ 2 11.43 1.8114600826 15.0410796771 7.8189203229
DBA/2J 1 17.955 2.5617914165 23.0618378542 12.8481621458
DBA/2J 2 12.4833333333 2.0916939326 16.6530489807 8.313617686
FVB/NJ 1 11.24 2.5617914165 16.3468378542 6.1331621458
FVB/NJ 2 9.44 1.8114600826 13.0510796771 5.8289203229
LP/J 1 10.3814285714 1.369335111 13.1111482258 7.6517089171
LP/J 2 6.0 2.0916939326 10.1697156473 1.8302843527
NZB/BlNJ 1 10.1785714286 1.369335111 12.9082910829 7.4488517742
NZB/BlNJ 2 9.4925 1.8114600826 13.1035796771 5.8814203229


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.0805555556 1.2076400551 10.487942007 5.6731691041
A/J both 6.3633333333 1.6536292488 9.6597829935 3.0668836731
BALB/cJ both 13.7225 1.1692924554 16.0534419086 11.3915580914
BTBR T+ Itpr3tf/J both 11.7332142857 1.4523992141 14.6285192032 8.8379093682
C3H/HeJ both 15.7425 1.0968935521 17.9291173326 13.5558826674
C57BL/6J both 11.53125 1.3835254912 14.2892576602 8.7732423398
CAST/EiJ both 11.58625 1.2808957083 14.1396689271 9.0328310729
DBA/2J both 15.2191666667 1.6536292488 18.5156163269 11.9227170065
FVB/NJ both 10.34 1.5687704495 13.4672867355 7.2127132645
LP/J both 8.1907142857 1.2500262151 10.682596003 5.6988325685
NZB/BlNJ both 9.8355357143 1.1353926939 12.0988996834 7.5721717452




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA