Project measure / variable:   Project1202   Ymaze.Distance_14_5XFAD_Chow

ID, description, units MPD:130314   Ymaze.Distance_14_5XFAD_Chow   Ymaze.Distance    14 5XFAD Chow  
Data set, strains Project1202   F1 AD-BXD   48 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Distance 14 5XFAD Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested48 strains39 strains
Mean of the strain means11.93   None 8.2105   None
Median of the strain means12.188   None 8.446   None
SD of the strain means± 3.7572 ± 2.1756
Coefficient of variation (CV)0.3149 0.265
Min–max range of strain means1.53   –   25.983   None 3.8225   –   12.948   None
Mean sample size per strain6.0   mice 5.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1684.3107 1684.3107 110.1474 < 0.0001
strain 38 1963.8611 51.6806 3.3797 < 0.0001
sex:strain 38 1085.3787 28.5626 1.8679 0.0019
Residuals 391 5978.9466 15.2914


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 5.864 3.1517   5 1.4095 0.5375 1.1, 8.52 -1.61
(B6.5XFAD x BXD101)F1 f 1.53 0.0   1   0.0 0.0 1.53, 1.53 -2.77
(B6.5XFAD x BXD113)F1 f 7.02 3.0325   6 1.238 0.432 2.57, 11.51 -1.31
(B6.5XFAD x BXD113)F1 m 8.446 1.7494   5 0.78237 0.2071 5.85, 10.39 0.11
(B6.5XFAD x BXD124)F1 f 10.137 7.4021   12 2.1368 0.7302 1.24, 19.48 -0.48
(B6.5XFAD x BXD124)F1 m 9.19 3.6046   6 1.4716 0.3922 4.85, 14.85 0.45
(B6.5XFAD x BXD125)F1 f 13.949 3.6158   9 1.2053 0.2592 8.35, 20.4 0.54
(B6.5XFAD x BXD125)F1 m 6.435 1.8829   6 0.7687 0.2926 3.92, 9.06 -0.82
(B6.5XFAD x BXD12)F1 f 13.305 5.5245   6 2.2554 0.4152 6.66, 22.55 0.37
(B6.5XFAD x BXD12)F1 m 7.8917 2.9822   6 1.2175 0.3779 5.64, 13.56 -0.15
(B6.5XFAD x BXD14)F1-ADtg f 12.493 6.1268   3 3.5373 0.4904 5.55, 17.14 0.15
(B6.5XFAD x BXD14)F1-ADtg m 7.3111 3.2046   9 1.0682 0.4383 3.16, 11.64 -0.41
(B6.5XFAD x BXD152)F1 f 13.188 8.1805   5 3.6584 0.6203 4.37, 24.6 0.33
(B6.5XFAD x BXD152)F1 m 5.4675 2.9871   8 1.0561 0.5463 2.17, 9.95 -1.26
(B6.5XFAD x BXD154)F1 f 15.42 3.0767   3 1.7764 0.1995 12.51, 18.64 0.93
(B6.5XFAD x BXD154)F1 m 8.5075 4.6143   4 2.3072 0.5424 3.6, 13.57 0.14
(B6.5XFAD x BXD161)F1 f 10.867 3.595   7 1.3588 0.3308 4.49, 14.35 -0.28
(B6.5XFAD x BXD161)F1 m 8.704 3.9654   5 1.7734 0.4556 4.23, 14.98 0.23
(B6.5XFAD x BXD169)F1 f 8.2867 1.8362   6 0.74964 0.2216 6.34, 10.75 -0.97
(B6.5XFAD x BXD169)F1 m 5.9883 3.1198   6 1.2736 0.521 3.57, 11.91 -1.02
(B6.5XFAD x BXD16)F1-ADtg f 15.627 2.3896   7 0.90318 0.1529 12.05, 18.72 0.98
(B6.5XFAD x BXD16)F1-ADtg m 10.803 3.2666   7 1.2346 0.3024 5.54, 15.27 1.19
(B6.5XFAD x BXD172)F1 f 14.095 4.1083   2   2.905 0.2915 11.19, 17.0 0.58
(B6.5XFAD x BXD19)F1 f 7.9667 2.3636   6 0.96492 0.2967 5.7, 12.3 -1.05
(B6.5XFAD x BXD19)F1 m 9.13 2.692   6 1.099 0.2949 5.3, 13.02 0.42
(B6.5XFAD x BXD22)F1-ADtg f 9.805 7.3281   4 3.664 0.7474 2.41, 18.19 -0.57
(B6.5XFAD x BXD28)F1 f 13.202 2.7117   5 1.2127 0.2054 9.63, 15.8 0.34
(B6.5XFAD x BXD28)F1 m 6.695 1.9587   2   1.385 0.2926 5.31, 8.08 -0.7
(B6.5XFAD x BXD31)F1 f 14.676 6.9295   5 3.099 0.4722 2.62, 19.11 0.73
(B6.5XFAD x BXD31)F1 m 4.43 0.57983   2   0.41 0.1309 4.02, 4.84 -1.74
(B6.5XFAD x BXD32)F1-ADtg f 16.133 5.5008   7 2.0791 0.341 6.82, 24.78 1.12
(B6.5XFAD x BXD32)F1-ADtg m 12.948 3.8016   4 1.9008 0.2936 7.63, 16.6 2.18
(B6.5XFAD x BXD33)F1 f 10.118 2.2555   5 1.0087 0.2229 8.29, 13.91 -0.48
(B6.5XFAD x BXD34)F1-ADtg f 14.386 2.7413   5 1.2259 0.1906 11.83, 18.05 0.65
(B6.5XFAD x BXD34)F1-ADtg m 9.828 1.1307   5 0.50567 0.1151 8.28, 11.33 0.74
(B6.5XFAD x BXD38)F1 f 9.686 3.5534   10 1.1237 0.3669 3.51, 15.09 -0.6
(B6.5XFAD x BXD38)F1 m 12.018 3.7496   6 1.5308 0.312 6.19, 15.45 1.75
(B6.5XFAD x BXD39)F1 f 5.045 3.3859   8 1.1971 0.6711 1.29, 9.36 -1.83
(B6.5XFAD x BXD39)F1 m 6.5157 3.0104   7 1.1378 0.462 3.36, 11.56 -0.78
(B6.5XFAD x BXD42)F1-ADtg f 14.7 5.2823   5 2.3623 0.3593 8.97, 20.78 0.74
(B6.5XFAD x BXD42)F1-ADtg m 10.936 1.932   5 0.86402 0.1767 7.93, 12.95 1.25
(B6.5XFAD x BXD48a)F1 f 11.65 0.88425   3 0.51052 0.0759 11.1, 12.67 -0.07
(B6.5XFAD x BXD48a)F1 m 8.5133 3.4738   3 2.0056 0.408 6.22, 12.51 0.14
(B6.5XFAD x BXD49)F1 f 12.397 4.0425   3 2.3339 0.3261 7.92, 15.78 0.12
(B6.5XFAD x BXD49)F1 m 9.79 4.1623   3 2.4031 0.4252 5.09, 13.01 0.73
(B6.5XFAD x BXD50)F1 f 11.95 2.4703   8 0.87338 0.2067 8.9, 15.89 0.01
(B6.5XFAD x BXD50)F1 m 5.0825 2.4735   4 1.2368 0.4867 2.44, 8.29 -1.44
(B6.5XFAD x BXD51)F1-ADtg f 14.23 6.0953   2   4.31 0.4283 9.92, 18.54 0.61
(B6.5XFAD x BXD53)F1 f 11.173 1.5941   3 0.92037 0.1427 9.39, 12.46 -0.2
(B6.5XFAD x BXD55)F1-ADtg f 14.144 8.826   5 3.9471 0.624 7.05, 26.93 0.59
(B6.5XFAD x BXD55)F1-ADtg m 9.5786 5.7287   7 2.1652 0.5981 2.66, 18.39 0.63
(B6.5XFAD x BXD60)F1-ADtg f 11.979 2.8518   7 1.0779 0.2381 8.03, 15.57 0.01
(B6.5XFAD x BXD60)F1-ADtg m 8.8057 2.54   7 0.96002 0.2884 4.21, 11.15 0.27
(B6.5XFAD x BXD61)F1-ADtg f 11.85 4.6999   6 1.9187 0.3966 4.46, 19.01 -0.02
(B6.5XFAD x BXD61)F1-ADtg m 5.236 2.0304   5 0.90801 0.3878 2.43, 7.69 -1.37
(B6.5XFAD x BXD62)F1-ADtg f 11.157 4.2314   4 2.1157 0.3792 7.63, 16.36 -0.21
(B6.5XFAD x BXD62)F1-ADtg m 5.856 1.538   5 0.68783 0.2626 3.77, 7.43 -1.08
(B6.5XFAD x BXD64)F1 f 13.707 3.8326   4 1.9163 0.2796 10.3, 17.3 0.47
(B6.5XFAD x BXD65a)F1 f 25.983 5.2033   3 3.0041 0.2003 21.05, 31.42 3.74
(B6.5XFAD x BXD65)F1-ADtg f 14.937 5.2639   6 2.149 0.3524 8.4, 21.64 0.8
(B6.5XFAD x BXD65)F1-ADtg m 10.952 2.0766   5 0.92869 0.1896 8.63, 13.1 1.26
(B6.5XFAD x BXD66)F1-ADtg f 12.548 3.984   6 1.6265 0.3175 8.68, 19.52 0.16
(B6.5XFAD x BXD66)F1-ADtg m 10.843 5.1872   4 2.5936 0.4784 6.13, 16.44 1.21
(B6.5XFAD x BXD68)F1-ADtg f 15.451 4.6749   8 1.6528 0.3026 5.85, 20.3 0.94
(B6.5XFAD x BXD68)F1-ADtg m 10.224 1.7582   5 0.78629 0.172 8.15, 12.71 0.93
(B6.5XFAD x BXD73)F1 f 11.428 4.7118   6 1.9236 0.4123 5.7, 18.32 -0.13
(B6.5XFAD x BXD73)F1 m 7.5088 2.911   8 1.0292 0.3877 3.3, 12.0 -0.32
(B6.5XFAD x BXD74)F1 f 9.6167 3.3035   9 1.1012 0.3435 4.84, 13.8 -0.62
(B6.5XFAD x BXD74)F1 m 3.8225 0.70547   4 0.35274 0.1846 3.31, 4.85 -2.02
(B6.5XFAD x BXD75)F1-ADtg f 9.478 2.9883   5 1.3364 0.3153 5.99, 14.2 -0.65
(B6.5XFAD x BXD75)F1-ADtg m 6.725 1.8593   4 0.92963 0.2765 5.08, 9.39 -0.68
(B6.5XFAD x BXD77)F1-ADtg f 11.816 2.8558   5 1.2771 0.2417 8.72, 15.11 -0.03
(B6.5XFAD x BXD77)F1-ADtg m 8.628 2.5389   5 1.1354 0.2943 6.12, 12.48 0.19
(B6.5XFAD x BXD78)F1 f 11.26 2.7729   4 1.3864 0.2463 9.0, 15.29 -0.18
(B6.5XFAD x BXD78)F1 m 11.603 2.2484   3 1.2981 0.1938 9.51, 13.98 1.56
(B6.5XFAD x BXD83)F1 f 5.8775 3.6408   8 1.2872 0.6194 2.04, 12.76 -1.61
(B6.5XFAD x BXD83)F1 m 7.0375 4.0966   4 2.0483 0.5821 1.46, 10.4 -0.54
(B6.5XFAD x BXD87)F1-ADtg f 7.42 4.2265   7 1.5975 0.5696 2.58, 14.31 -1.2
(B6.5XFAD x BXD87)F1-ADtg m 7.9067 2.1647   3 1.2498 0.2738 5.44, 9.49 -0.14
(B6.5XFAD x BXD99)F1-ADtg f 14.243 2.8304   12 0.81706 0.1987 10.28, 18.57 0.62
(B6.5XFAD x BXD99)F1-ADtg m 8.0033 4.0631   3 2.3458 0.5077 5.34, 12.68 -0.1
(B6.5XFAD x D2)F1-ADtg f 12.94 4.4341   3 2.56 0.3427 9.36, 17.9 0.27
(B6.5XFAD x D2)F1-ADtg m 9.16 4.2011   3 2.4255 0.4586 4.31, 11.67 0.44
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 12.504 3.1379   12 0.90584 0.2509 6.81, 17.87 0.15
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 7.4387 3.5578   15 0.91862 0.4783 1.6, 13.85 -0.35
C57BL/6J f 15.397 5.1034   16 1.2758 0.3314 7.35, 26.67 0.92
C57BL/6J m 6.2492 3.2244   12 0.93081 0.516 2.61, 13.82 -0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 16.1328571429 1.478001722 19.0386819544 13.2270323313
129S1/SvImJ 2 12.9475 1.9552124969 16.7915449024 9.1034550976
A/J 1 14.386 1.7487952214 17.8242182842 10.9477817158
A/J 2 9.828 1.7487952214 13.2662182842 6.3897817158
AKR/J 1 7.42 1.478001722 10.3258248116 4.5141751884
AKR/J 2 7.9066666667 2.2576849228 12.3453873851 3.4679459483
ALR/LtJ 1 10.1366666667 1.1288424614 12.3560270259 7.9173063075
ALR/LtJ 2 9.19 1.5964243187 12.3286495198 6.0513504802
ALS/LtJ 1 13.9488888889 1.3034749979 16.5115854905 11.3861922873
ALS/LtJ 2 6.435 1.5964243187 9.5736495198 3.2963504802
BALB/cJ 1 14.7 1.7487952214 18.1382182842 11.2617817158
BALB/cJ 2 10.936 1.7487952214 14.3742182842 7.4977817158
BPH/2J 1 11.95 1.3825440152 14.6681502177 9.2318497823
BPH/2J 2 5.0825 1.9552124969 8.9265449024 1.2384550976
BPL/1J 1 13.305 1.5964243187 16.4436495198 10.1663504802
BPL/1J 2 7.8916666667 1.5964243187 11.0303161864 4.7530171469
BPN/3J 1 8.2866666667 1.5964243187 11.4253161864 5.1480171469
BPN/3J 2 5.9883333333 1.5964243187 9.1269828531 2.8496838136
BTBR T+ Itpr3tf/J 1 12.4933333333 2.2576849228 16.9320540517 8.0546126149
BTBR T+ Itpr3tf/J 2 7.3111111111 1.3034749979 9.8738077127 4.7484145095
BUB/BnJ 1 13.188 1.7487952214 16.6262182842 9.7497817158
BUB/BnJ 2 5.4675 1.3825440152 8.1856502177 2.7493497823
C3H/HeJ 1 14.144 1.7487952214 17.5822182842 10.7057817158
C3H/HeJ 2 9.5785714286 1.478001722 12.4843962401 6.672746617
C57BL/10J 1 5.8775 1.3825440152 8.5956502177 3.1593497823
C57BL/10J 2 7.0375 1.9552124969 10.8815449024 3.1934550976
C57BL/6J 1 11.9785714286 1.478001722 14.8843962401 9.072746617
C57BL/6J 2 8.8057142857 1.478001722 11.7115390973 5.8998894742
C57BLKS/J 1 11.4283333333 1.5964243187 14.5669828531 8.2896838136
C57BLKS/J 2 7.50875 1.3825440152 10.2269002177 4.7905997823
C57BR/cdJ 1 5.045 1.3825440152 7.7631502177 2.3268497823
C57BR/cdJ 2 6.5157142857 1.478001722 9.4215390973 3.6098894742
C57L/J 1 11.26 1.9552124969 15.1040449024 7.4159550976
C57L/J 2 11.6033333333 2.2576849228 16.0420540517 7.1646126149
C58/J 1 7.9666666667 1.5964243187 11.1053161864 4.8280171469
C58/J 2 9.13 1.5964243187 12.2686495198 5.9913504802
CAST/EiJ 1 15.6271428571 1.478001722 18.5329676687 12.7213180456
CAST/EiJ 2 10.8028571429 1.478001722 13.7086819544 7.8970323313
CBA/J 1 14.2433333333 1.1288424614 16.4626936925 12.0239729741
CBA/J 2 8.0033333333 2.2576849228 12.4420540517 3.5646126149
CE/J 1 15.42 2.2576849228 19.8587207184 10.9812792816
CE/J 2 8.5075 1.9552124969 12.3515449024 4.6634550976
DBA/2J 1 11.85 1.5964243187 14.9886495198 8.7113504802
DBA/2J 2 5.236 1.7487952214 8.6742182842 1.7977817158
FVB/NJ 1 11.1575 1.9552124969 15.0015449024 7.3134550976
FVB/NJ 2 5.856 1.7487952214 9.2942182842 2.4177817158
I/LnJ 1 14.676 1.7487952214 18.1142182842 11.2377817158
I/LnJ 2 4.43 2.7650880304 9.8663004354 -1.0063004354
KK/HlJ 1 7.02 1.5964243187 10.1586495198 3.8813504802
KK/HlJ 2 8.446 1.7487952214 11.8842182842 5.0077817158
LP/J 1 14.9366666667 1.5964243187 18.0753161864 11.7980171469
LP/J 2 10.952 1.7487952214 14.3902182842 7.5137817158
MA/MyJ 1 12.5041666667 1.1288424614 14.7235270259 10.2848063075
MA/MyJ 2 7.4386666667 1.0096673918 9.4237229186 5.4536104148
NOD/ShiLtJ 1 9.478 1.7487952214 12.9162182842 6.0397817158
NOD/ShiLtJ 2 6.725 1.9552124969 10.5690449024 2.8809550976
NON/ShiLtJ 1 12.3966666667 2.2576849228 16.8353873851 7.9579459483
NON/ShiLtJ 2 9.79 2.2576849228 14.2287207184 5.3512792816
NZB/BlNJ 1 12.5483333333 1.5964243187 15.6869828531 9.4096838136
NZB/BlNJ 2 10.8425 1.9552124969 14.6865449024 6.9984550976
NZW/LacJ 1 9.6166666667 1.3034749979 12.1793632683 7.053970065
NZW/LacJ 2 3.8225 1.9552124969 7.6665449024 -0.0215449024
PL/J 1 11.816 1.7487952214 15.2542182842 8.3777817158
PL/J 2 8.628 1.7487952214 12.0662182842 5.1897817158
RBF/DnJ 1 11.65 2.2576849228 16.0887207184 7.2112792816
RBF/DnJ 2 8.5133333333 2.2576849228 12.9520540517 4.0746126149
RIIIS/J 1 10.8671428571 1.478001722 13.7729676687 7.9613180456
RIIIS/J 2 8.704 1.7487952214 12.1422182842 5.2657817158
SEA/GnJ 1 13.202 1.7487952214 16.6402182842 9.7637817158
SEA/GnJ 2 6.695 2.7650880304 12.1313004354 1.2586995646
SJL/J 1 12.94 2.2576849228 17.3787207184 8.5012792816
SJL/J 2 9.16 2.2576849228 13.5987207184 4.7212792816
SM/J 1 9.686 1.23658496 12.1171874639 7.2548125361
SM/J 2 12.0183333333 1.5964243187 15.1569828531 8.8796838136
SPRET/EiJ 1 15.3975 0.9776062484 17.3195224512 13.4754775488
SPRET/EiJ 2 6.2491666667 1.1288424614 8.4685270259 4.0298063075
SWR/J 1 15.45125 1.3825440152 18.1694002177 12.7330997823
SWR/J 2 10.224 1.7487952214 13.6622182842 6.7857817158


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.5401785714 1.2254942879 16.949561223 12.1307959198
A/J both 12.107 1.23658496 14.5381874639 9.6758125361
AKR/J both 7.6633333333 1.3492248053 10.3159763291 5.0106903376
ALR/LtJ both 9.6633333333 0.9776062484 11.5853557846 7.7413108821
ALS/LtJ both 10.1919444444 1.0304874666 12.2179339977 8.1659548912
BALB/cJ both 12.818 1.23658496 15.2491874639 10.3868125361
BPH/2J both 8.51625 1.197318239 10.8702371398 6.1622628602
BPL/1J both 10.5983333333 1.1288424614 12.8176936925 8.3789729741
BPN/3J both 7.1375 1.1288424614 9.3568603592 4.9181396408
BTBR T+ Itpr3tf/J both 9.9022222222 1.3034749979 12.4649188239 7.3395256206
BUB/BnJ both 9.32775 1.1146426199 11.5191927654 7.1363072346
C3H/HeJ both 11.8612857143 1.144855211 14.1121279347 9.6104434939
C57BL/10J both 6.4575 1.197318239 8.8114871398 4.1035128602
C57BL/6J both 10.3921428571 1.0451050402 12.4468712863 8.337414428
C57BLKS/J both 9.4685416667 1.0559354336 11.5445631871 7.3925201462
C57BR/cdJ both 5.7803571429 1.011918604 7.7698393897 3.7908748961
C57L/J both 11.4316666667 1.4933182111 14.3676044567 8.4957288766
C58/J both 8.5483333333 1.1288424614 10.7676936925 6.3289729741
CAST/EiJ both 13.215 1.0451050402 15.2697284292 11.1602715708
CBA/J both 11.1233333333 1.2620842398 13.6046536482 8.6420130185
CE/J both 11.96375 1.4933182111 14.89968779 9.02781221
DBA/2J both 8.543 1.1839399617 10.870684782 6.215315218
FVB/NJ both 8.50675 1.3115964161 11.0854137131 5.9280862869
I/LnJ both 9.553 1.6358481395 12.7691587101 6.3368412899
KK/HlJ both 7.733 1.1839399617 10.060684782 5.405315218
LP/J both 12.9443333333 1.1839399617 15.2720181153 10.6166485513
MA/MyJ both 9.9714166667 0.7572505439 11.4602088556 8.4826244777
NOD/ShiLtJ both 8.1015 1.3115964161 10.6801637131 5.5228362869
NON/ShiLtJ both 11.0933333333 1.5964243187 14.2319828531 7.9546838136
NZB/BlNJ both 11.6954166667 1.2620842398 14.1767369815 9.2140963518
NZW/LacJ both 6.7195833333 1.1749364853 9.0295668335 4.4095998332
PL/J both 10.222 1.23658496 12.6531874639 7.7908125361
RBF/DnJ both 10.0816666667 1.5964243187 13.2203161864 6.9430171469
RIIIS/J both 9.7855714286 1.144855211 12.036413649 7.5347292081
SEA/GnJ both 9.9485 1.6358481395 13.1646587101 6.7323412899
SJL/J both 11.05 1.5964243187 14.1886495198 7.9113504802
SM/J both 10.8521666667 1.0096673918 12.8372229186 8.8671104148
SPRET/EiJ both 10.8233333333 0.7466591056 12.2913022284 9.3553644383
SWR/J both 12.837625 1.1146426199 15.0290677654 10.6461822346




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA