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Project measure / variable:   Auwerx2   cecum_wt_CD

ID, description, units MPD:114651   cecum_wt_CD   cecum weight   [g]  CD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 21wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Auwerx2 - cecum weight CD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.24805   g 0.29194   g
Median of the strain means0.23278   g 0.2827   g
SD of the strain means± 0.11903 ± 0.12167
Coefficient of variation (CV)0.4798 0.4168
Min–max range of strain means0.0553   –   0.41945   g 0.1099   –   0.51884   g
Mean sample size per strain4.3   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0229 0.0229 5.9276 0.0178
strain 7 0.9867 0.141 36.4293 < 0.0001
sex:strain 7 0.027 0.0039 0.9962 0.4426
Residuals 62 0.2399 0.0039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.27762 0.04567   5 0.02043 0.1645 0.203, 0.3277 0.25
129S1/SvImJ m 0.29216 0.04788   5 0.02141 0.1639 0.2445, 0.3657 0.0
A/J f 0.29894 0.07115   5 0.03182 0.238 0.2156, 0.404 0.43
A/J m 0.2827 0.02544   5 0.01138 0.09 0.247, 0.3151 -0.08
C57BL/6J f 0.23278 0.0611   5 0.02732 0.2625 0.1776, 0.3348 -0.13
C57BL/6J m 0.30256 0.06438   5 0.02879 0.2128 0.223, 0.395 0.09
CAST/EiJ f 0.1788 0.0   1   0.0 0.0 0.1788, 0.1788 -0.58
CAST/EiJ m 0.2128 0.09869   3 0.05698 0.4637 0.1464, 0.3262 -0.65
DBA/2J f 0.14592 0.04069   5 0.0182 0.2788 0.1048, 0.2019 -0.86
DBA/2J m 0.22284 0.03719   5 0.01663 0.1669 0.1801, 0.2527 -0.57
NOD/ShiLtJ f 0.41945 0.0604   6 0.02466 0.144 0.3371, 0.5051 1.44
NOD/ShiLtJ m 0.43608 0.09737   5 0.04355 0.2233 0.3402, 0.5996 1.18
NZO/HlLtJ f 0.4112 0.0945   4 0.04725 0.2298 0.3041, 0.5155 1.37
NZO/HlLtJ m 0.51884 0.09921   5 0.04437 0.1912 0.3768, 0.6202 1.86
PWK/PhJ f 0.21246 0.05998   5 0.02682 0.2823 0.1309, 0.2854 -0.3
PWK/PhJ m 0.24959 0.05203   5 0.02327 0.2085 0.203, 0.33463 -0.35
WSB/EiJ f 0.0553 0.00065574   3 0.00037859 0.0119 0.0547, 0.056 -1.62
WSB/EiJ m 0.1099 0.04564   5 0.02041 0.4153 0.0603, 0.1712 -1.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.27762 0.0278182818 0.333227953 0.222012047
129S1/SvImJ m 0.29216 0.0278182818 0.347767953 0.236552047
A/J f 0.29894 0.0278182818 0.354547953 0.243332047
A/J m 0.2827 0.0278182818 0.338307953 0.227092047
C57BL/6J f 0.23278 0.0278182818 0.288387953 0.177172047
C57BL/6J m 0.30256 0.0278182818 0.358167953 0.246952047
DBA/2J f 0.14592 0.0278182818 0.201527953 0.090312047
DBA/2J m 0.22284 0.0278182818 0.278447953 0.167232047
NOD/ShiLtJ f 0.41945 0.0253945008 0.4702128837 0.3686871163
NOD/ShiLtJ m 0.43608 0.0278182818 0.491687953 0.380472047
NZO/HlLtJ f 0.4112 0.0311017846 0.4733715815 0.3490284185
NZO/HlLtJ m 0.51884 0.0278182818 0.574447953 0.463232047
PWK/PhJ f 0.21246 0.0278182818 0.268067953 0.156852047
PWK/PhJ m 0.249586 0.0278182818 0.305193953 0.193978047
WSB/EiJ f 0.0553 0.0359132474 0.1270895586 -0.0164895586
WSB/EiJ m 0.1099 0.0278182818 0.165507953 0.054292047


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.28489 0.0196704957 0.3242107607 0.2455692393
A/J both 0.29082 0.0196704957 0.3301407607 0.2514992393
C57BL/6J both 0.26767 0.0196704957 0.3069907607 0.2283492393
DBA/2J both 0.18438 0.0196704957 0.2237007607 0.1450592393
NOD/ShiLtJ both 0.427765 0.0188330658 0.4654117621 0.3901182379
NZO/HlLtJ both 0.46502 0.0208637114 0.5067259647 0.4233140353
PWK/PhJ both 0.231023 0.0196704957 0.2703437607 0.1917022393
WSB/EiJ both 0.0826 0.022713532 0.1280037035 0.0371962965




  GWAS USING LINEAR MIXED MODELS