Project measure / variable:   Auwerx2   horiz_act_day_CD

ID, description, units MPD:114623   horiz_act_day_CD   horizontal activity (beam breaks) during day, basal activity test, for 48h   [n/h]  CD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 19wks
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  STRAIN COMPARISON PLOT
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Auwerx2 - horizontal activity (beam breaks) during day, basal activity test, for 48h CD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means34550.0   n/h 24371.0   n/h
Median of the strain means22957.0   n/h 20903.0   n/h
SD of the strain means± 39593.0 ± 14061.0
Coefficient of variation (CV)1.1459 0.5769
Min–max range of strain means9924.0   –   138890.0   n/h 9256.0   –   53528.0   n/h
Mean sample size per strain4.3   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 139312521.5385 139312521.5385 3.2809 0.0749
strain 7 7697388112.5795 1099626873.2256 25.8969 < 0.0001
sex:strain 7 1653726631.0692 236246661.5813 5.5638 < 0.0001
Residuals 62 2632629486.3 42461765.9081


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23903.0 6189.0   5 2768.0 0.2589 15935.0, 32170.0 -0.27
129S1/SvImJ m 21682.0 5332.0   5 2385.0 0.2459 14852.0, 29375.0 -0.19
A/J f 9924.0 2233.0   5 998.7 0.225 7301.0, 12810.0 -0.62
A/J m 11688.0 3144.0   5 1406.0 0.269 7475.0, 15891.0 -0.9
C57BL/6J f 31493.0 6681.0   5 2988.0 0.2121 25450.0, 42488.0 -0.08
C57BL/6J m 53528.0 6392.0   5 2859.0 0.1194 45141.0, 61197.0 2.07
CAST/EiJ f 138890.0 0.0   1   0.0 0.0 138890.0, 138890.0 2.64
CAST/EiJ m 22787.0 11202.0   3 6467.0 0.4916 15082.0, 35637.0 -0.11
DBA/2J f 19280.0 3366.0   5 1505.0 0.1746 14993.0, 24051.0 -0.39
DBA/2J m 20507.0 5918.0   5 2647.0 0.2886 11728.0, 27445.0 -0.27
NOD/ShiLtJ f 26908.0 7599.0   6 3102.0 0.2824 17578.0, 37686.0 -0.19
NOD/ShiLtJ m 40740.0 14131.0   5 6319.0 0.3469 22654.0, 62094.0 1.16
NZO/HlLtJ f 19980.0 1969.0   4 984.7 0.0986 17747.0, 21694.0 -0.37
NZO/HlLtJ m 18247.0 2313.0   5 1034.0 0.1268 15872.0, 21969.0 -0.44
PWK/PhJ f 22957.0 6847.0   5 3062.0 0.2982 17723.0, 34289.0 -0.29
PWK/PhJ m 20903.0 5699.0   5 2549.0 0.2726 13693.0, 28798.0 -0.25
WSB/EiJ f 17619.0 12518.0   3 7227.0 0.7105 8281.0, 31843.0 -0.43
WSB/EiJ m 9256.0 2624.0   5 1173.0 0.2834 6195.0, 12782.0 -1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23902.6 2914.1642338092 29727.931299342 18077.2687006579
129S1/SvImJ m 21682.2 2914.1642338092 27507.531299342 15856.8687006579
A/J f 9923.8 2914.1642338092 15749.131299342 4098.4687006579
A/J m 11687.8 2914.1642338092 17513.131299342 5862.4687006579
C57BL/6J f 31492.8 2914.1642338092 37318.131299342 25667.4687006579
C57BL/6J m 53527.6 2914.1642338092 59352.931299342 47702.268700658
DBA/2J f 19280.0 2914.1642338092 25105.331299342 13454.6687006579
DBA/2J m 20506.6 2914.1642338092 26331.9312993421 14681.268700658
NOD/ShiLtJ f 26908.5 2660.2558118868 32226.2755959842 21590.7244040158
NOD/ShiLtJ m 40739.6 2914.1642338092 46564.931299342 34914.268700658
NZO/HlLtJ f 19980.0 3258.134662198 26492.918388393 13467.081611607
NZO/HlLtJ m 18247.4 2914.1642338092 24072.731299342 12422.068700658
PWK/PhJ f 22957.4 2914.1642338092 28782.731299342 17132.0687006579
PWK/PhJ m 20902.6 2914.1642338092 26727.931299342 15077.268700658
WSB/EiJ f 17619.0 3762.1698485521 25139.4703694975 10098.5296305025
WSB/EiJ m 9256.4 2914.1642338092 15081.731299342 3431.068700658


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22792.4 2060.6252912178 26911.531264423 18673.268735577
A/J both 10805.8 2060.6252912178 14924.931264423 6686.668735577
C57BL/6J both 42510.2 2060.6252912178 46629.331264423 38391.068735577
DBA/2J both 19893.3 2060.6252912178 24012.431264423 15774.168735577
NOD/ShiLtJ both 33824.05 1972.8985127402 37767.8179329652 29880.2820670348
NZO/HlLtJ both 19113.7 2185.6231753569 23482.6984745065 14744.7015254935
PWK/PhJ both 21930.0 2060.6252912178 26049.131264423 17810.868735577
WSB/EiJ both 13437.7 2379.4051331671 18194.063088684 8681.336911316




  GWAS USING LINEAR MIXED MODELS