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Project measure / variable:   Project1061   precs_nicotine

ID, description, units MPD:113872   precs_nicotine   precs   [%]  nicotine  
Data set, strains Project1061   BXD w/par   31 strains     sex: both
Procedure fear conditioning test
Ontology mappings

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  STRAIN COMPARISON PLOT
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Project1061 - precs nicotine



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains31 strains
Mean of the strain means12.85   % 11.053   %
Median of the strain means12.5   % 6.9444   %
SD of the strain means± 10.521 ± 12.296
Coefficient of variation (CV)0.8187 1.1125
Min–max range of strain means0.0   –   36.113   % 0.0   –   50.51   %
Mean sample size per strain8.1   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 249.7042 249.7042 1.2032 0.2733
strain 30 58776.2136 1959.2071 9.4401 < 0.0001
sex:strain 30 9091.0864 303.0362 1.4601 0.0577
Residuals 446 92563.1504 207.5407


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD102/RwwJ f 1.3889 2.5717   8 0.90925 1.8516 -1.09
BXD102/RwwJ m 2.0833 4.1334   8 1.4614 1.9841 -0.73
BXD124/RwwJ f 31.249 31.276   8 11.058 1.0009 1.75
BXD124/RwwJ m 29.861 29.086   8 10.283 0.974 1.53
BXD13/TyJ f 13.889 9.8488   8 3.4821 0.7091 5.5556, 33.333 0.1
BXD13/TyJ m 6.9445 7.1209   8 2.5176 1.0254 -0.33
BXD154/RwwJ f 18.055 22.567   8 7.9785 1.2498 0.49
BXD154/RwwJ m 20.371 23.075   9 7.6915 1.1327 0.76
BXD161/RwwJ f 4.1666 7.7151   8 2.7277 1.8516 -0.83
BXD161/RwwJ m 5.5555 7.8567   8 2.7778 1.4142 -0.45
BXD18/TyJ f 12.5 10.179   8 3.5989 0.8143 -0.03
BXD18/TyJ m 3.0865 5.6323   9 1.8774 1.8248 -0.65
BXD21/TyJ f 16.667 16.798   8 5.9391 1.0079 0.36
BXD21/TyJ m 6.25 6.9246   8 2.4482 1.1079 -0.39
BXD31/TyJ f 20.833 18.485   8 6.5355 0.8873 0.76
BXD31/TyJ m 29.861 28.162   8 9.9568 0.9431 1.53
BXD32/TyJ f 12.5 13.849   8 4.8964 1.1079 -0.03
BXD32/TyJ m 7.1429 5.2845   7 1.9973 0.7398 -0.32
BXD33/TyJ f 36.113 25.024   8 8.8472 0.6929 2.21
BXD33/TyJ m 50.51 31.274   11 9.4295 0.6192 5.5556, 94.44 3.21
BXD34/TyJ f 12.778 11.727   10 3.7083 0.9177 -0.01
BXD34/TyJ m 6.9445 9.2725   8 3.2783 1.3352 -0.33
BXD38/TyJ f 9.877 17.74   9 5.9132 1.796 -0.28
BXD38/TyJ m 7.639 7.236   8 2.5583 0.9473 -0.28
BXD39/TyJ f 22.222 27.858   8 9.8491 1.2536 0.89
BXD39/TyJ m 15.278 12.511   8 4.4233 0.8189 0.34
BXD40/TyJ f 2.7778 2.9696   8 1.0499 1.069 -0.96
BXD40/TyJ m 13.195 15.413   8 5.4491 1.1681 0.17
BXD45/RwwJ f 2.0834 5.8927   8 2.0834 2.8284 -1.02
BXD45/RwwJ m 0.69445 1.9642   8 0.69445 2.8284 -0.84
BXD48a/RwwJ f 36.112 22.024   8 7.7866 0.6099 5.5556, 61.11 2.21
BXD48a/RwwJ m 4.8611 7.5344   8 2.6638 1.5499 -0.5
BXD55/RwwJ f 2.7778 5.9393   8 2.0998 2.1381 -0.96
BXD55/RwwJ m 0.0 0.0   9 0.0 None -0.9
BXD56/RwwJ f 34.029 17.173   8 6.0716 0.5047 11.111, 55.56 2.01
BXD56/RwwJ m 38.194 28.084   8 9.9291 0.7353 2.21
BXD64/RwwJ f 4.1666 11.785   8 4.1666 2.8284 -0.83
BXD64/RwwJ m 4.1667 5.7507   8 2.0332 1.3801 -0.56
BXD67/RwwJ f 14.583 15.696   8 5.5494 1.0763 0.16
BXD67/RwwJ m 5.5555 7.8567   8 2.7778 1.4142 -0.45
BXD73a/RwwJ f 6.9445 7.1209   8 2.5176 1.0254 -0.56
BXD73a/RwwJ m 3.3333 3.8845   10 1.2284 1.1653 -0.63
BXD74/RwwJ f 12.5 12.859   8 4.5462 1.0287 -0.03
BXD74/RwwJ m 7.6389 5.8926   8 2.0833 0.7714 -0.28
BXD78 f 9.7223 11.011   8 3.8932 1.1326 -0.3
BXD78 m 26.389 13.849   8 4.8964 0.5248 11.111, 44.444 1.25
BXD84/RwwJ f 0.69445 1.9642   8 0.69445 2.8284 -1.16
BXD84/RwwJ m 1.3889 2.5717   8 0.90925 1.8516 -0.79
BXD85/RwwJ f 6.9444 11.405   8 4.0322 1.6423 -0.56
BXD85/RwwJ m 6.9444 11.405   8 4.0322 1.6423 -0.33
BXD89/RwwJ f 0.69445 1.9642   8 0.69445 2.8284 -1.16
BXD89/RwwJ m 0.69445 1.9642   8 0.69445 2.8284 -0.84
BXD90/RwwJ f 5.5556 13.608   8 4.8113 2.4495 -0.69
BXD90/RwwJ m 0.0 0.0   8 0.0 None -0.9
BXD98/RwwJ f 0.0 0.0   8 0.0 None -1.22
BXD98/RwwJ m 1.3889 2.5717   8 0.90925 1.8516 -0.79
BXD99/RwwJ f 11.111 7.2739   8 2.5717 0.6547 -0.17
BXD99/RwwJ m 11.667 14.451   10 4.57 1.2387 0.05
C57BL/6J f 17.361 10.473   8 3.7026 0.6032 5.5556, 33.333 0.43
C57BL/6J m 6.25 9.1227   8 3.2253 1.4596 -0.39
DBA/2J f 18.056 19.189   8 6.7843 1.0627 0.49
DBA/2J m 18.75 13.259   8 4.6879 0.7072 5.5556, 44.444 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD102/RwwJ f 1.3889 5.0933865929 11.3989183922 -8.6211183922
BXD102/RwwJ m 2.083325 5.0933865929 12.0933433922 -7.9266933922
BXD124/RwwJ f 31.24925 5.0933865929 41.2592683922 21.2392316078
BXD124/RwwJ m 29.860725 5.0933865929 39.8707433922 19.8507066078
BXD13/TyJ f 13.88885 5.0933865929 23.8988683922 3.8788316078
BXD13/TyJ m 6.944525 5.0933865929 16.9545433922 -3.0654933922
BXD154/RwwJ f 18.05545 5.0933865929 28.0654683922 8.0454316078
BXD154/RwwJ m 20.3705777778 4.8020909321 29.8081136243 10.9330419312
BXD161/RwwJ f 4.16665 5.0933865929 14.1766683922 -5.8433683922
BXD161/RwwJ m 5.555525 5.0933865929 15.5655433922 -4.4544933922
BXD18/TyJ f 12.500025 5.0933865929 22.5100433922 2.4900066078
BXD18/TyJ m 3.0864666667 4.8020909321 12.5240025132 -6.3510691799
BXD21/TyJ f 16.6667 5.0933865929 26.6767183922 6.6566816078
BXD21/TyJ m 6.25 5.0933865929 16.2600183922 -3.7600183922
BXD31/TyJ f 20.8332 5.0933865929 30.8432183922 10.8231816078
BXD31/TyJ m 29.8612 5.0933865929 39.8712183922 19.8511816078
BXD32/TyJ f 12.500075 5.0933865929 22.5100933922 2.4900566078
BXD32/TyJ m 7.1429142857 5.4450593055 17.8440740739 -3.5582455025
BXD33/TyJ f 36.1125 5.0933865929 46.1225183922 26.1024816078
BXD33/TyJ m 50.5050545455 4.3436546812 59.0416269132 41.9684821777
BXD34/TyJ f 12.77778 4.555663463 21.7310126324 3.8245473676
BXD34/TyJ m 6.944475 5.0933865929 16.9544933922 -3.0655433922
BXD38/TyJ f 9.8770222222 4.8020909321 19.3145580688 0.4394863757
BXD38/TyJ m 7.63895 5.0933865929 17.6489683922 -2.3710683922
BXD39/TyJ f 22.222475 5.0933865929 32.2324933922 12.2124566078
BXD39/TyJ m 15.277775 5.0933865929 25.2877933922 5.2677566078
BXD40/TyJ f 2.7778 5.0933865929 12.7878183922 -7.2322183922
BXD40/TyJ m 13.1945 5.0933865929 23.2045183922 3.1844816078
BXD45/RwwJ f 2.083375 5.0933865929 12.0933933922 -7.9266433922
BXD45/RwwJ m 0.69445 5.0933865929 10.7044683922 -9.3155683922
BXD48a/RwwJ f 36.112075 5.0933865929 46.1220933922 26.1020566078
BXD48a/RwwJ m 4.8611 5.0933865929 14.8711183922 -5.1489183922
BXD55/RwwJ f 2.777825 5.0933865929 12.7878433922 -7.2321933922
BXD55/RwwJ m 0.0 4.8020909321 9.4375358465 -9.4375358465
BXD56/RwwJ f 34.028875 5.0933865929 44.0388933922 24.0188566078
BXD56/RwwJ m 38.19445 5.0933865929 48.2044683922 28.1844316078
BXD64/RwwJ f 4.166625 5.0933865929 14.1766433922 -5.8433933922
BXD64/RwwJ m 4.166725 5.0933865929 14.1767433922 -5.8432933922
BXD67/RwwJ f 14.583425 5.0933865929 24.5934433922 4.5734066078
BXD67/RwwJ m 5.555525 5.0933865929 15.5655433922 -4.4544933922
BXD73a/RwwJ f 6.944525 5.0933865929 16.9545433922 -3.0654933922
BXD73a/RwwJ m 3.33334 4.555663463 12.2865726324 -5.6198926324
BXD74/RwwJ f 12.5 5.0933865929 22.5100183922 2.4899816078
BXD74/RwwJ m 7.6389 5.0933865929 17.6489183922 -2.3711183922
BXD78 f 9.722275 5.0933865929 19.7322933922 -0.2877433922
BXD78 m 26.388875 5.0933865929 36.3988933922 16.3788566078
BXD84/RwwJ f 0.69445 5.0933865929 10.7044683922 -9.3155683922
BXD84/RwwJ m 1.3889 5.0933865929 11.3989183922 -8.6211183922
BXD85/RwwJ f 6.94445 5.0933865929 16.9544683922 -3.0655683922
BXD85/RwwJ m 6.9444 5.0933865929 16.9544183922 -3.0656183922
BXD89/RwwJ f 0.69445 5.0933865929 10.7044683922 -9.3155683922
BXD89/RwwJ m 0.69445 5.0933865929 10.7044683922 -9.3155683922
BXD90/RwwJ f 5.555575 5.0933865929 15.5655933922 -4.4544433922
BXD90/RwwJ m 0.0 5.0933865929 10.0100183922 -10.0100183922
BXD98/RwwJ f 0.0 5.0933865929 10.0100183922 -10.0100183922
BXD98/RwwJ m 1.3889 5.0933865929 11.3989183922 -8.6211183922
BXD99/RwwJ f 11.11115 5.0933865929 21.1211683922 1.1011316078
BXD99/RwwJ m 11.66668 4.555663463 20.6199126324 2.7134473676
C57BL/6J f 17.361025 5.0933865929 27.3710433922 7.3510066078
C57BL/6J m 6.25 5.0933865929 16.2600183922 -3.7600183922
DBA/2J f 18.0561 5.0933865929 28.0661183922 8.0460816078
DBA/2J m 18.7499 5.0933865929 28.7599183922 8.7398816078


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD102/RwwJ both 1.7361125 3.6015681991 8.8142643849 -5.3420393849
BXD124/RwwJ both 30.5549875 3.6015681991 37.6331393849 23.4768356151
BXD13/TyJ both 10.4166875 3.6015681991 17.4948393849 3.3385356151
BXD154/RwwJ both 19.2130138889 3.5000951525 26.0917410798 12.334286698
BXD161/RwwJ both 4.8610875 3.6015681991 11.9392393849 -2.2170643849
BXD18/TyJ both 7.7932458333 3.5000951525 14.6719730242 0.9145186425
BXD21/TyJ both 11.45835 3.6015681991 18.5365018849 4.3801981151
BXD31/TyJ both 25.3472 3.6015681991 32.4253518849 18.2690481151
BXD32/TyJ both 9.8214946429 3.7279772607 17.1480779022 2.4949113835
BXD33/TyJ both 43.3087772727 3.3470107176 49.8866480529 36.7309064926
BXD34/TyJ both 9.8611275 3.4167475972 16.5760519743 3.1462030257
BXD38/TyJ both 8.7579861111 3.5000951525 15.636713302 1.8792589202
BXD39/TyJ both 18.750125 3.6015681991 25.8282768849 11.6719731151
BXD40/TyJ both 7.98615 3.6015681991 15.0643018849 0.9079981151
BXD45/RwwJ both 1.3889125 3.6015681991 8.4670643849 -5.6892393849
BXD48a/RwwJ both 20.4865875 3.6015681991 27.5647393849 13.4084356151
BXD55/RwwJ both 1.3889125 3.5000951525 8.2676396909 -5.4898146909
BXD56/RwwJ both 36.1116625 3.6015681991 43.1898143849 29.0335106151
BXD64/RwwJ both 4.166675 3.6015681991 11.2448268849 -2.9114768849
BXD67/RwwJ both 10.069475 3.6015681991 17.1476268849 2.9913231151
BXD73a/RwwJ both 5.1389325 3.4167475972 11.8538569743 -1.5759919743
BXD74/RwwJ both 10.06945 3.6015681991 17.1476018849 2.9912981151
BXD78 both 18.055575 3.6015681991 25.1337268849 10.9774231151
BXD84/RwwJ both 1.041675 3.6015681991 8.1198268849 -6.0364768849
BXD85/RwwJ both 6.944425 3.6015681991 14.0225768849 -0.1337268849
BXD89/RwwJ both 0.69445 3.6015681991 7.7726018849 -6.3837018849
BXD90/RwwJ both 2.7777875 3.6015681991 9.8559393849 -4.3003643849
BXD98/RwwJ both 0.69445 3.6015681991 7.7726018849 -6.3837018849
BXD99/RwwJ both 11.388915 3.4167475972 18.1038394743 4.6739905257
C57BL/6J both 11.8055125 3.6015681991 18.8836643849 4.7273606151
DBA/2J both 18.403 3.6015681991 25.4811518849 11.3248481151




  GWAS USING LINEAR MIXED MODELS