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Project measure / variable:   Project1061   baseline_nicotine

ID, description, units MPD:113866   baseline_nicotine   baseline   [%]  nicotine  
Data set, strains Project1061   BXD w/par   31 strains     sex: both
Procedure fear conditioning test
Ontology mappings

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  STRAIN COMPARISON PLOT
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Project1061 - baseline nicotine



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains31 strains
Mean of the strain means0.26509   % 0.34864   %
Median of the strain means0.0   % 0.0   %
SD of the strain means± 0.53057 ± 0.68862
Coefficient of variation (CV)2.0015 1.9752
Min–max range of strain means0.0   –   2.0834   % 0.0   –   2.0834   %
Mean sample size per strain8.1   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0533 1.0533 0.2871 0.5924
strain 30 96.3112 3.2104 0.875 0.6598
sex:strain 30 91.9738 3.0658 0.8356 0.7179
Residuals 446 1636.3501 3.6689


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD102/RwwJ f 1.0417 2.9463   8 1.0417 2.8284 1.46
BXD102/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD124/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD124/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD13/TyJ f 0.0 0.0   8 0.0 None -0.5
BXD13/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD154/RwwJ f 1.0417 2.9463   8 1.0417 2.8284 1.46
BXD154/RwwJ m 0.0 0.0   9 0.0 None -0.51
BXD161/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD161/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD18/TyJ f 1.0417 2.9463   8 1.0417 2.8284 1.46
BXD18/TyJ m 1.8518 3.6746   9 1.2249 1.9843 2.18
BXD21/TyJ f 1.0417 2.9463   8 1.0417 2.8284 1.46
BXD21/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD31/TyJ f 0.0 0.0   8 0.0 None -0.5
BXD31/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD32/TyJ f 1.0417 2.9463   8 1.0417 2.8284 1.46
BXD32/TyJ m 1.1905 3.1497   7 1.1905 2.6458 1.22
BXD33/TyJ f 0.0 0.0   8 0.0 None -0.5
BXD33/TyJ m 1.5152 5.0253   11 1.5152 3.3166 1.69
BXD34/TyJ f 0.0 0.0   10 0.0 None -0.5
BXD34/TyJ m 2.0834 5.8927   8 2.0834 2.8284 2.52
BXD38/TyJ f 0.92592 2.7778   9 0.92592 3.0 1.25
BXD38/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD39/TyJ f 0.0 0.0   8 0.0 None -0.5
BXD39/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD40/TyJ f 0.0 0.0   8 0.0 None -0.5
BXD40/TyJ m 0.0 0.0   8 0.0 None -0.51
BXD45/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD45/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD48a/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD48a/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD55/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD55/RwwJ m 0.0 0.0   9 0.0 None -0.51
BXD56/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD56/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD64/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD64/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD67/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD67/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD73a/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD73a/RwwJ m 0.0 0.0   10 0.0 None -0.51
BXD74/RwwJ f 2.0834 5.8927   8 2.0834 2.8284 3.43
BXD74/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD78 f 0.0 0.0   8 0.0 None -0.5
BXD78 m 1.0417 2.9463   8 1.0417 2.8284 1.01
BXD84/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD84/RwwJ m 2.0834 5.8927   8 2.0834 2.8284 2.52
BXD85/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD85/RwwJ m 1.0417 2.9463   8 1.0417 2.8284 1.01
BXD89/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD89/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD90/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD90/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD98/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD98/RwwJ m 0.0 0.0   8 0.0 None -0.51
BXD99/RwwJ f 0.0 0.0   8 0.0 None -0.5
BXD99/RwwJ m 0.0 0.0   10 0.0 None -0.51
C57BL/6J f 0.0 0.0   8 0.0 None -0.5
C57BL/6J m 0.0 0.0   8 0.0 None -0.51
DBA/2J f 0.0 0.0   8 0.0 None -0.5
DBA/2J m 0.0 0.0   8 0.0 None -0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD102/RwwJ f 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD102/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD124/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD124/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD13/TyJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD13/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD154/RwwJ f 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD154/RwwJ m 0.0 0.6384831279 1.2548091014 -1.2548091014
BXD161/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD161/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD18/TyJ f 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD18/TyJ m 1.8518444444 0.6384831279 3.1066535458 0.5970353431
BXD21/TyJ f 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD21/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD31/TyJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD31/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD32/TyJ f 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD32/TyJ m 1.1904714286 0.7239718169 2.6132912108 -0.2323483536
BXD33/TyJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD33/TyJ m 1.5151818182 0.5775297192 2.6501993562 0.3801642802
BXD34/TyJ f 0.0 0.6057182795 1.1904164367 -1.1904164367
BXD34/TyJ m 2.083375 0.6772136241 3.414301037 0.752448963
BXD38/TyJ f 0.9259222222 0.6384831279 2.1807313236 -0.3288868792
BXD38/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD39/TyJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD39/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD40/TyJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD40/TyJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD45/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD45/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD48a/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD48a/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD55/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD55/RwwJ m 0.0 0.6384831279 1.2548091014 -1.2548091014
BXD56/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD56/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD64/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD64/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD67/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD67/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD73a/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD73a/RwwJ m 0.0 0.6057182795 1.1904164367 -1.1904164367
BXD74/RwwJ f 2.083375 0.6772136241 3.414301037 0.752448963
BXD74/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD78 f 0.0 0.6772136241 1.330926037 -1.330926037
BXD78 m 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD84/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD84/RwwJ m 2.083375 0.6772136241 3.414301037 0.752448963
BXD85/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD85/RwwJ m 1.0416625 0.6772136241 2.372588537 -0.289263537
BXD89/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD89/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD90/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD90/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD98/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD98/RwwJ m 0.0 0.6772136241 1.330926037 -1.330926037
BXD99/RwwJ f 0.0 0.6772136241 1.330926037 -1.330926037
BXD99/RwwJ m 0.0 0.6057182795 1.1904164367 -1.1904164367
C57BL/6J f 0.0 0.6772136241 1.330926037 -1.330926037
C57BL/6J m 0.0 0.6772136241 1.330926037 -1.330926037
DBA/2J f 0.0 0.6772136241 1.330926037 -1.330926037
DBA/2J m 0.0 0.6772136241 1.330926037 -1.330926037


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD102/RwwJ both 0.52083125 0.4788623459 1.461938076 -0.420275576
BXD124/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD13/TyJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD154/RwwJ both 0.52083125 0.4653705506 1.4354226884 -0.3937601884
BXD161/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD18/TyJ both 1.4467534722 0.4653705506 2.3613449106 0.5321620338
BXD21/TyJ both 0.52083125 0.4788623459 1.461938076 -0.420275576
BXD31/TyJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD32/TyJ both 1.1160669643 0.4956696189 2.0902050767 0.1419288518
BXD33/TyJ both 0.7575909091 0.445016536 1.6321806597 -0.1169988415
BXD34/TyJ both 1.0416875 0.4542887097 1.9344998275 0.1488751725
BXD38/TyJ both 0.4629611111 0.4653705506 1.3775525495 -0.4516303273
BXD39/TyJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD40/TyJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD45/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD48a/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD55/RwwJ both 0.0 0.4653705506 0.9145914384 -0.9145914384
BXD56/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD64/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD67/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD73a/RwwJ both 0.0 0.4542887097 0.8928123275 -0.8928123275
BXD74/RwwJ both 1.0416875 0.4788623459 1.982794326 0.100580674
BXD78 both 0.52083125 0.4788623459 1.461938076 -0.420275576
BXD84/RwwJ both 1.0416875 0.4788623459 1.982794326 0.100580674
BXD85/RwwJ both 0.52083125 0.4788623459 1.461938076 -0.420275576
BXD89/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD90/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD98/RwwJ both 0.0 0.4788623459 0.941106826 -0.941106826
BXD99/RwwJ both 0.0 0.4542887097 0.8928123275 -0.8928123275
C57BL/6J both 0.0 0.4788623459 0.941106826 -0.941106826
DBA/2J both 0.0 0.4788623459 0.941106826 -0.941106826




  GWAS USING LINEAR MIXED MODELS