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Project measure / variable:   CSNA03   trial_init_latency_in_rev_Binghamton

ID, description, units MPD:112886   trial_init_latency_in_rev_Binghamton   mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), founders   [centiseconds/n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means590.2   centiseconds/n 492.6   centiseconds/n
Median of the strain means572.2   centiseconds/n 412.6   centiseconds/n
SD of the strain means± 287.3 ± 271.8
Coefficient of variation (CV)0.4869 0.5518
Min–max range of strain means126.5   –   1107.0   centiseconds/n 141.9   –   822.2   centiseconds/n
Mean sample size per strain6.1   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 197432.0554 197432.0554 1.5312 0.2199
strain 7 4013680.8082 573382.9726 4.447 0.0004
sex:strain 7 2094264.9378 299180.7054 2.3203 0.0341
Residuals 73 9412494.1049 128938.2754


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 601.4 321.8   7 121.6 0.5351 215.3, 1005.0 0.04
129S1/SvImJ m 788.2 199.9   5 89.38 0.2536 598.1, 1014.0 1.09
A/J f 1107.0 274.7   6 112.2 0.2482 581.6, 1303.0 1.8
A/J m 486.4 435.8   6 177.9 0.8961 105.7, 1234.0 -0.02
C57BL/6J f 476.6 354.1   6 144.6 0.743 144.7, 1097.0 -0.4
C57BL/6J m 788.6 581.4   6 237.3 0.7373 249.7, 1919.0 1.09
CAST/EiJ f 401.8 159.6   7 60.33 0.3972 173.8, 647.7 -0.66
CAST/EiJ m 321.9 71.25   4 35.625 0.2213 266.9, 421.0 -0.63
NOD/ShiLtJ f 543.1 117.1   5 52.38 0.2157 406.1, 660.8 -0.16
NOD/ShiLtJ m 252.4 126.1   5 56.37 0.4995 112.1, 414.5 -0.88
NZO/HlLtJ f 684.4 415.5   7 157.0 0.6071 111.6, 1116.0 0.33
NZO/HlLtJ m 822.2 989.5   4 494.8 1.2036 246.4, 2300.0 1.21
PWK/PhJ f 126.5 64.06   6 26.153 0.5064 59.19, 226.5 -1.61
PWK/PhJ m 141.9 39.223   6 16.013 0.2765 70.2, 184.9 -1.29
WSB/EiJ f 780.5 396.8   5 177.5 0.5084 335.3, 1206.0 0.66
WSB/EiJ m 338.8 152.1   4 76.03 0.4489 240.6, 565.4 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 601.4142857143 135.7193929768 871.9026458446 330.925925584
129S1/SvImJ m 788.16 160.5853513929 1108.2061437862 468.1138562138
A/J f 1107.1 146.593698938 1399.260820657 814.939179343
A/J m 486.3833333333 146.593698938 778.5441539904 194.2225126763
C57BL/6J f 476.5666666667 146.593698938 768.7274873237 184.4058460096
C57BL/6J m 788.55 146.593698938 1080.710820657 496.389179343
CAST/EiJ f 401.8285714286 135.7193929768 672.3169315589 131.3402112982
CAST/EiJ m 321.95 179.5398809527 679.7724667213 -35.8724667213
NOD/ShiLtJ f 543.08 160.5853513929 863.1261437862 223.0338562138
NOD/ShiLtJ m 252.38 160.5853513929 572.4261437862 -67.6661437862
NZO/HlLtJ f 684.3857142857 135.7193929768 954.874074416 413.8973541554
NZO/HlLtJ m 822.175 179.5398809527 1179.9974667213 464.3525332787
PWK/PhJ f 126.4933333333 146.593698938 418.6541539904 -165.6674873237
PWK/PhJ m 141.85 146.593698938 434.010820657 -150.310820657
WSB/EiJ f 780.5 160.5853513929 1100.5461437862 460.4538562138
WSB/EiJ m 338.75 179.5398809527 696.5724667213 -19.0724667213


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 694.7871428571 105.1277897513 904.3065256827 485.2677600316
A/J both 796.7416666667 103.6573985983 1003.3305641503 590.1527691831
C57BL/6J both 632.5583333333 103.6573985983 839.1472308169 425.9694358497
CAST/EiJ both 361.8892857143 112.5325758197 586.166385892 137.6121855366
NOD/ShiLtJ both 397.73 113.5509909292 624.0367985638 171.4232014362
NZO/HlLtJ both 753.2803571429 112.5325758197 977.5574573206 529.0032569652
PWK/PhJ both 134.1716666667 103.6573985983 340.7605641503 -72.4172308169
WSB/EiJ both 559.625 120.4390135447 799.6596078396 319.5903921604




  GWAS USING LINEAR MIXED MODELS