Project measure / variable:   CSNA03   correct_in_rev_Binghamton

ID, description, units MPD:112876   correct_in_rev_Binghamton   total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders   [n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means56.48   n 52.53   n
Median of the strain means54.73   n 52.25   n
SD of the strain means± 12.65 ± 6.2513
Coefficient of variation (CV)0.224 0.119
Min–max range of strain means40.143   –   80.67   n 43.0   –   60.0   n
Mean sample size per strain6.1   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 249.9404 249.9404 0.3305 0.5671
strain 7 3644.2972 520.6139 0.6884 0.6815
sex:strain 7 4734.4645 676.3521 0.8943 0.5156
Residuals 73 55208.4214 756.2797


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 51.14 17.639   7 6.667 0.3449 36.0, 88.0 -0.42
129S1/SvImJ m 43.0 13.172   5 5.8907 0.3063 23.0, 58.0 -1.52
A/J f 60.33 24.089   6 9.8342 0.3993 30.0, 88.0 0.3
A/J m 57.0 25.06   6 10.231 0.4396 17.0, 88.0 0.71
C57BL/6J f 80.67 60.08   6 24.527 0.7448 22.0, 189.0 1.91
C57BL/6J m 47.0 17.821   6 7.2755 0.3792 32.0, 79.0 -0.88
CAST/EiJ f 40.143 21.091   7 7.9715 0.5254 18.0, 72.0 -1.29
CAST/EiJ m 60.0 30.332   4 15.166 0.5055 28.0, 94.0 1.19
NOD/ShiLtJ f 52.8 25.675   5 11.482 0.4863 29.0, 93.0 -0.29
NOD/ShiLtJ m 60.0 44.21   5 19.771 0.7368 18.0, 125.0 1.19
NZO/HlLtJ f 44.857 18.479   7 6.9844 0.412 17.0, 73.0 -0.92
NZO/HlLtJ m 48.75 14.08   4 7.0401 0.2888 32.0, 65.0 -0.6
PWK/PhJ f 56.67 19.937   6 8.1391 0.3518 34.0, 80.0 0.02
PWK/PhJ m 50.5 18.759   6 7.6583 0.3715 23.0, 69.0 -0.32
WSB/EiJ f 65.2 23.253   5 10.399 0.3566 35.0, 90.0 0.69
WSB/EiJ m 54.0 29.063   4 14.532 0.5382 31.0, 96.0 0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 51.1428571429 10.3942274199 71.8585225166 30.4271917691
129S1/SvImJ m 43.0 12.29861574 67.5111058222 18.4888941778
A/J f 60.3333333333 11.2270487781 82.7088092803 37.9578573863
A/J m 57.0 11.2270487781 79.375475947 34.624524053
C57BL/6J f 80.6666666667 11.2270487781 103.0421426137 58.2911907197
C57BL/6J m 47.0 11.2270487781 69.375475947 24.624524053
CAST/EiJ f 40.1428571429 10.3942274199 60.8585225166 19.4271917691
CAST/EiJ m 60.0 13.7502704119 87.404249411 32.595750589
NOD/ShiLtJ f 52.8 12.29861574 77.3111058222 28.2888941778
NOD/ShiLtJ m 60.0 12.29861574 84.5111058222 35.4888941778
NZO/HlLtJ f 44.8571428571 10.3942274199 65.5728082309 24.1414774834
NZO/HlLtJ m 48.75 13.7502704119 76.154249411 21.345750589
PWK/PhJ f 56.6666666667 11.2270487781 79.0421426137 34.2911907197
PWK/PhJ m 50.5 11.2270487781 72.875475947 28.124524053
WSB/EiJ f 65.2 12.29861574 89.7111058222 40.6888941778
WSB/EiJ m 54.0 13.7502704119 81.404249411 26.595750589


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 47.0714285714 8.0513339388 63.117713971 31.0251431718
A/J both 58.6666666667 7.9387223237 74.4885174411 42.8448158923
C57BL/6J both 63.8333333333 7.9387223237 79.6551841077 48.0114825589
CAST/EiJ both 50.0714285714 8.6184380844 67.2479509032 32.8949062396
NOD/ShiLtJ both 56.4 8.6964345889 73.7319691412 39.0680308588
NZO/HlLtJ both 46.8035714286 8.6184380844 63.9800937604 29.6270490968
PWK/PhJ both 53.5833333333 7.9387223237 69.4051841077 37.7614825589
WSB/EiJ both 59.6 9.223961805 77.9833293666 41.2166706334




  GWAS USING LINEAR MIXED MODELS