Project measure / variable:   CSNA03   goodness_of_fit_do

ID, description, units MPD:112553   goodness_of_fit_do   percentage of observed rhythms that fit expected sine wave, indicating stability and robustness of circadian rhythm, in fibroblast cultures, DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 8-12wks
Procedure in vitro assay
Ontology mappings

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Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means82.97   % 82.49   %
Median of the strain means82.16   % 81.86   %
SD of the strain means± 5.6634 ± 5.2659
Coefficient of variation (CV)0.0683 0.0638
Min–max range of strain means75.44   –   93.69   % 75.03   –   93.27   %
Mean sample size per strain28.8   mice 23.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 50.879 50.879 0.588 0.4436
strain 8 5058.0065 632.2508 7.307 < 0.0001
sex:strain 8 376.1403 47.0175 0.5434 0.8238
Residuals 451 39023.5754 86.5268


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 82.51 8.2546   10 2.6103 0.1 73.29, 91.96 -0.08
129S1/SvImJ m 77.4 8.7219   9 2.9073 0.1127 67.56, 90.79 -0.97
A/J f 82.16 2.7478   9 0.91593 0.0334 78.21, 87.17 -0.14
A/J m 80.97 2.4969   10 0.78958 0.0308 77.39, 85.1 -0.29
C57BL/6J f 81.08 9.3688   10 2.9627 0.1156 66.49, 91.91 -0.33
C57BL/6J m 81.86 7.6814   10 2.4291 0.0938 64.21, 92.55 -0.12
CAST/EiJ f 93.69 1.3937   10 0.44074 0.0149 91.01, 95.28 1.89
CAST/EiJ m 93.27 1.547   10 0.48919 0.0166 90.45, 94.58 2.05
J:DO f 79.78 10.731   184 0.79107 0.1345 41.148, 94.55 -0.56
J:DO m 80.88 9.6819   136 0.83021 0.1197 43.763, 94.05 -0.31
NOD/ShiLtJ f 75.44 6.8848   9 2.2949 0.0913 68.38, 86.62 -1.33
NOD/ShiLtJ m 75.03 6.8402   10 2.1631 0.0912 65.95, 85.99 -1.42
NZO/HlLtJ f 84.02 6.7595   8 2.3899 0.0805 73.3, 93.86 0.19
NZO/HlLtJ m 82.75 3.4839   7 1.3168 0.0421 79.6, 89.8 0.05
PWK/PhJ f 89.81 2.1808   10 0.68962 0.0243 86.83, 93.49 1.21
PWK/PhJ m 86.68 4.2131   10 1.3323 0.0486 77.13, 90.94 0.8
WSB/EiJ f 78.23 11.02   9 3.6734 0.1409 65.38, 92.02 -0.84
WSB/EiJ m 83.56 5.7541   8 2.0344 0.0689 73.11, 90.29 0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 82.513 2.9415433813 88.2938325782 76.7321674218
129S1/SvImJ m 77.3955555556 3.1006589737 83.4890881287 71.3020229824
A/J f 82.1555555556 3.1006589737 88.2490881287 76.0620229824
A/J m 80.967 2.9415433813 86.7478325782 75.1861674218
C57BL/6J f 81.078 2.9415433813 86.8588325782 75.2971674218
C57BL/6J m 81.861 2.9415433813 87.6418325782 76.0801674218
CAST/EiJ f 93.691 2.9415433813 99.4718325782 87.9101674218
CAST/EiJ m 93.268 2.9415433813 99.0488325782 87.4871674218
J:DO f 79.7840815217 0.6857508367 81.1317450655 78.436417978
J:DO m 80.8816397059 0.7976379405 82.4491880281 79.3140913837
NOD/ShiLtJ f 75.4433333333 3.1006589737 81.5368659065 69.3498007602
NOD/ShiLtJ m 75.028 2.9415433813 80.8088325782 69.2471674218
NZO/HlLtJ f 84.02 3.2887454797 90.4831673058 77.5568326942
NZO/HlLtJ m 82.7485714286 3.515816805 89.6579879119 75.8391549453
PWK/PhJ f 89.813 2.9415433813 95.5938325782 84.0321674218
PWK/PhJ m 86.678 2.9415433813 92.4588325782 80.8971674218
WSB/EiJ f 78.2344444444 3.1006589737 84.3279770176 72.1409118713
WSB/EiJ m 83.565 3.2887454797 90.0281673058 77.1018326942


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 79.9542777778 2.1369817229 84.1539552808 75.7546002748
A/J both 81.5612777778 2.1369817229 85.7609552808 77.3616002748
C57BL/6J both 81.4695 2.0799852721 85.557165917 77.381834083
CAST/EiJ both 93.4795 2.0799852721 97.567165917 89.391834083
J:DO both 80.3328606138 0.5259468828 81.3664713686 79.299249859
NOD/ShiLtJ both 75.2356666667 2.1369817229 79.4353441697 71.0359891636
NZO/HlLtJ both 83.3842857143 2.4071152152 88.1148397982 78.6537316304
PWK/PhJ both 88.2455 2.0799852721 92.333165917 84.157834083
WSB/EiJ both 80.8997222222 2.2599741648 85.3411091352 76.4583353093




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA