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Project measure / variable:   CSNA03   phase_do

ID, description, units MPD:112550   phase_do   specific time point when bioluminescence reaches highest circadian rhythm amplitude (cycle number), in fibroblast cultures, DO   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 8-12wks
Procedure in vitro assay
Ontology mappings

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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means3.683   n 3.9269   n
Median of the strain means3.0683   n 3.4233   n
SD of the strain means± 1.7941 ± 1.5511
Coefficient of variation (CV)0.4871 0.395
Min–max range of strain means1.978   –   8.0908   n 2.0932   –   7.6412   n
Mean sample size per strain28.8   mice 23.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 27.2031 27.2031 8.6673 0.0034
strain 8 2188.5232 273.5654 87.1616 < 0.0001
sex:strain 8 32.131 4.0164 1.2797 0.2519
Residuals 451 1415.5081 3.1386


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.7396 0.86203   10 0.2726 0.3147 1.2015, 3.9857 -0.53
129S1/SvImJ m 3.2516 0.43862   9 0.14621 0.1349 2.7477, 4.07 -0.44
A/J f 3.883 1.5044   9 0.50148 0.3874 0.96967, 5.7873 0.11
A/J m 4.1686 1.4181   10 0.44844 0.3402 2.1573, 6.211 0.16
C57BL/6J f 4.4274 0.79374   10 0.251 0.1793 3.3537, 5.6963 0.41
C57BL/6J m 3.4233 0.69286   10 0.2191 0.2024 2.5543, 4.4967 -0.32
CAST/EiJ f 1.978 0.90551   10 0.28635 0.4578 0.84725, 3.4713 -0.95
CAST/EiJ m 2.0932 0.83365   10 0.26362 0.3983 0.58775, 3.5928 -1.18
J:DO f 8.0908 2.2186   184 0.16356 0.2742 4.1413, 17.649 2.46
J:DO m 7.6412 1.6915   136 0.14504 0.2214 0.7805, 12.709 2.39
NOD/ShiLtJ f 3.2399 1.0086   9 0.33619 0.3113 2.178, 4.787 -0.25
NOD/ShiLtJ m 3.3653 0.86256   10 0.27276 0.2563 1.3388, 4.36 -0.36
NZO/HlLtJ f 2.8196 1.0878   8 0.3846 0.3858 0.78933, 3.886 -0.48
NZO/HlLtJ m 3.0046 1.2124   7 0.45825 0.4035 1.1, 4.1555 -0.59
PWK/PhJ f 2.9007 0.47471   10 0.15012 0.1637 1.9387, 3.524 -0.44
PWK/PhJ m 4.2627 1.2099   10 0.3826 0.2838 2.3375, 5.7205 0.22
WSB/EiJ f 3.0683 1.026   9 0.34201 0.3344 1.4805, 4.7633 -0.34
WSB/EiJ m 4.1313 0.83626   8 0.29566 0.2024 3.0187, 5.1455 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.73964 0.5602320051 3.840629177 1.638650823
129S1/SvImJ m 3.2516111111 0.5905363848 4.412155604 2.0910666182
A/J f 3.8830077778 0.5905363848 5.0435522707 2.7224632849
A/J m 4.16859 0.5602320051 5.269579177 3.067600823
C57BL/6J f 4.42744 0.5602320051 5.528429177 3.326450823
C57BL/6J m 3.42326 0.5602320051 4.524249177 2.322270823
CAST/EiJ f 1.978005 0.5602320051 3.078994177 0.877015823
CAST/EiJ m 2.093185 0.5602320051 3.194174177 0.992195823
J:DO f 8.0907945652 0.1306047596 8.3474639906 7.8341251399
J:DO m 7.6411698529 0.1519142317 7.9397174607 7.3426222452
NOD/ShiLtJ f 3.2398888889 0.5905363848 4.4004333818 2.079344396
NOD/ShiLtJ m 3.36534 0.5602320051 4.466329177 2.264350823
NZO/HlLtJ f 2.81955375 0.6263584233 4.0504970712 1.5886104288
NZO/HlLtJ m 3.0046 0.6696053204 4.320533763 1.688666237
PWK/PhJ f 2.90068 0.5602320051 4.001669177 1.799690823
PWK/PhJ m 4.26271 0.5602320051 5.363699177 3.161720823
WSB/EiJ f 3.0683222222 0.5905363848 4.2288667151 1.9077777293
WSB/EiJ m 4.13125 0.6263584233 5.3621933212 2.9003066788


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.9956255556 0.4069991159 3.795475649 2.1957754621
A/J both 4.0257988889 0.4069991159 4.8256489823 3.2259487954
C57BL/6J both 3.92535 0.3961438499 4.7038669131 3.1468330869
CAST/EiJ both 2.035595 0.3961438499 2.8141119131 1.2570780869
J:DO both 7.8659822091 0.100169278 8.062838672 7.6691257461
NOD/ShiLtJ both 3.3026144444 0.4069991159 4.1024645379 2.502764351
NZO/HlLtJ both 2.912076875 0.4584474233 3.8130351327 2.0111186173
PWK/PhJ both 3.581695 0.3961438499 4.3602119131 2.8031780869
WSB/EiJ both 3.5997861111 0.4304236565 4.4456709998 2.7539012224




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA