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Project measure / variable:   CSNA03   total_time_cc_acq_JAX

ID, description, units MPD:110499   total_time_cc_acq_JAX   total time for all trials (reversal learning assay), CC   [min]  acquisition  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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  STRAIN COMPARISON PLOT
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CSNA03 - total time for all trials (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means179.8   min 163.7   min
Median of the strain means111.4   min 124.8   min
SD of the strain means± 161.4 ± 133.4
Coefficient of variation (CV)0.8975 0.8147
Min–max range of strain means13.332   –   763.2   min 19.165   –   577.2   min
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 39845.4925 39845.4925 1.4188 0.2351
strain 34 3544486.1156 104249.5916 3.7122 < 0.0001
sex:strain 34 1238380.3747 36422.9522 1.297 0.1409
Residuals 192 5391945.9197 28083.0517


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 763.2 331.8   3 191.5 0.4347 385.6, 1008.0 3.62
129S1/SvImJ m 207.0 250.0   4 125.0 1.2079 24.352, 558.8 0.32
A/J f 442.0 211.8   6 86.46 0.4791 32.177, 596.8 1.63
A/J m 530.9 236.9   5 105.9 0.4462 292.9, 819.9 2.75
C57BL/6J f 150.9 93.61   14 25.017 0.6202 13.457, 325.1 -0.18
C57BL/6J m 85.03 58.29   11 17.575 0.6855 7.768, 219.2 -0.59
CAST/EiJ f 111.4 78.75   10 24.903 0.7066 20.858, 264.3 -0.42
CAST/EiJ m 221.1 209.6   8 74.09 0.9477 18.327, 539.2 0.43
CC001/UncJ f 276.6 50.53   3 29.173 0.1827 225.1, 326.1 0.6
CC001/UncJ m 118.3 54.55   2   38.575 0.461 79.75, 156.9 -0.34
CC002/UncJ f 57.76 21.645   4 10.822 0.3748 35.755, 79.36 -0.76
CC002/UncJ m 54.33 33.544   4 16.772 0.6174 7.665, 84.16 -0.82
CC003/UncJ f 90.34 101.6   2   71.86 1.125 18.475, 162.2 -0.55
CC003/UncJ m 95.85 55.29   3 31.92 0.5768 56.72, 159.1 -0.51
CC004/TauUncJ f 196.1 0.0   1   0.0 0.0 196.1, 196.1 0.1
CC004/TauUncJ m 362.6 472.2   2   333.9 1.302 28.762, 696.5 1.49
CC005/TauUncJ f 156.5 81.37   3 46.977 0.5199 70.8, 232.7 -0.14
CC005/TauUncJ m 19.556 4.3996   2   3.111 0.225 16.445, 22.667 -1.08
CC006/TauUncJ f 92.46 81.66   2   57.74 0.8833 34.712, 150.2 -0.54
CC006/TauUncJ m 49.956 59.25   2   41.894 1.186 8.062, 91.85 -0.85
CC007/UncJ f 53.41 0.0   1   0.0 0.0 53.41, 53.41 -0.78
CC008/GeniUncJ f 45.322 0.0   1   0.0 0.0 45.322, 45.322 -0.83
CC008/GeniUncJ m 109.8 0.0   1   0.0 0.0 109.8, 109.8 -0.4
CC009/UncJ f 65.33 12.799   2   9.05 0.1959 56.28, 74.38 -0.71
CC009/UncJ m 34.192 10.167   2   7.1895 0.2974 27.003, 41.382 -0.97
CC011/UncJ f 143.7 118.1   3 68.19 0.8217 75.17, 280.1 -0.22
CC011/UncJ m 74.33 68.09   3 39.314 0.9161 27.895, 152.5 -0.67
CC012/GeniUncJ f 62.67 24.244   3 13.997 0.3868 41.852, 89.29 -0.73
CC012/GeniUncJ m 171.7 0.0   1   0.0 0.0 171.7, 171.7 0.06
CC013/GeniUncJ f 360.3 36.204   2   25.6 0.1005 334.7, 385.9 1.12
CC013/GeniUncJ m 211.2 80.12   2   56.65 0.3792 154.6, 267.9 0.36
CC015/UncJ f 563.3 0.0   1   0.0 0.0 563.3, 563.3 2.38
CC015/UncJ m 459.6 0.0   1   0.0 0.0 459.6, 459.6 2.22
CC016/GeniUncJ f 69.64 41.207   3 23.791 0.5918 39.537, 116.6 -0.68
CC016/GeniUncJ m 47.863 39.453   4 19.727 0.8243 26.798, 107.0 -0.87
CC017/UncJ f 24.696 9.4151   2   6.6575 0.3812 18.038, 31.353 -0.96
CC017/UncJ m 58.42 74.2   3 42.839 1.2702 8.662, 143.7 -0.79
CC018/UncJ f 190.7 197.0   3 113.8 1.0334 18.195, 405.4 0.07
CC018/UncJ m 39.227 10.992   2   7.7725 0.2802 31.455, 47.0 -0.93
CC019/TauUncJ f 80.1 44.884   4 22.442 0.5604 12.955, 105.8 -0.62
CC019/TauUncJ m 122.0 94.58   4 47.29 0.7754 42.073, 257.9 -0.31
CC023/GeniUncJ f 176.3 225.8   2   159.7 1.2808 16.632, 336.0 -0.02
CC023/GeniUncJ m 577.2 0.0   1   0.0 0.0 577.2, 577.2 3.1
CC025/GeniUncJ f 312.8 78.78   3 45.481 0.2519 223.7, 373.3 0.82
CC025/GeniUncJ m 130.9 118.3   3 68.3 0.9039 30.718, 261.4 -0.25
CC026/GeniUncJ f 57.74 0.0   1   0.0 0.0 57.74, 57.74 -0.76
CC026/GeniUncJ m 216.9 266.5   2   188.4 1.2287 28.457, 405.3 0.4
CC027/GeniUncJ f 98.84 83.1   2   58.76 0.8407 40.083, 157.6 -0.5
CC027/GeniUncJ m 262.4 229.3   4 114.7 0.8739 88.1, 577.7 0.74
CC028/GeniUncJ f 571.6 577.9   3 333.7 1.011 194.7, 1237.0 2.43
CC028/GeniUncJ m 192.9 135.5   3 78.25 0.7026 47.61, 315.9 0.22
CC029/UncJ f 95.85 0.0   1   0.0 0.0 95.85, 95.85 -0.52
CC029/UncJ m 92.57 0.0   1   0.0 0.0 92.57, 92.57 -0.53
CC030/GeniUncJ f 49.08 3.0264   2   2.14 0.0617 46.94, 51.22 -0.81
CC030/GeniUncJ m 83.93 89.2   2   63.07 1.0628 20.853, 147.0 -0.6
CC032/GeniUncJ f 192.3 235.4   2   166.5 1.2239 25.882, 358.8 0.08
CC033/GeniUncJ f 244.2 72.34   2   51.15 0.2962 193.1, 295.4 0.4
CC033/GeniUncJ m 126.5 74.78   2   52.88 0.5911 73.64, 179.4 -0.28
CC035/UncJ m 150.9 0.0   1   0.0 0.0 150.9, 150.9 -0.1
CC036/UncJ f 119.1 41.317   3 23.854 0.3469 79.83, 162.2 -0.38
CC036/UncJ m 165.1 115.6   3 66.72 0.6998 89.91, 298.2 0.01
CC037/TauUncJ f 188.1 25.032   2   17.7 0.1331 170.4, 205.8 0.05
CC037/TauUncJ m 102.0 117.3   3 67.7 1.1497 27.895, 237.2 -0.46
CC040/TauUncJ f 79.25 47.991   3 27.708 0.6056 23.847, 108.0 -0.62
CC040/TauUncJ m 180.7 151.1   3 87.24 0.8361 9.228, 294.3 0.13
CC041/TauUncJ f 245.3 213.4   3 123.2 0.8699 36.722, 463.2 0.41
CC041/TauUncJ m 429.2 152.2   2   107.6 0.3547 321.6, 536.9 1.99
CC043/GeniUncJ f 158.0 165.3   2   116.9 1.0464 41.087, 274.9 -0.14
CC043/GeniUncJ m 260.8 340.6   2   240.8 1.306 19.952, 501.6 0.73
CC044/UncJ f 13.332 0.0   1   0.0 0.0 13.332, 13.332 -1.03
CC051/TauUncJ f 471.0 0.0   1   0.0 0.0 471.0, 471.0 1.8
CC051/TauUncJ m 208.0 0.0   1   0.0 0.0 208.0, 208.0 0.33
CC057/UncJ f 35.474 16.181   2   11.441 0.4561 24.032, 46.915 -0.89
CC057/UncJ m 192.4 142.0   2   100.4 0.7384 91.93, 292.8 0.21
CC059/TauUncJ f 364.4 387.3   4 193.7 1.0628 81.12, 930.4 1.14
CC059/TauUncJ m 435.8 465.1   5 208.0 1.0671 32.228, 1233.0 2.04
CC060/UncJ f 27.08 0.0   1   0.0 0.0 27.08, 27.08 -0.95
CC060/UncJ m 78.35 0.0   1   0.0 0.0 78.35, 78.35 -0.64
CC061/GeniUncJ f 329.2 244.1   3 140.9 0.7413 53.34, 517.0 0.93
CC061/GeniUncJ m 186.7 108.3   2   76.6 0.5802 110.1, 263.3 0.17
CC074/UncJ f 78.8 0.0   1   0.0 0.0 78.8, 78.8 -0.63
CC074/UncJ m 82.67 0.0   1   0.0 0.0 82.67, 82.67 -0.61
CC075/UncJ f 20.005 12.823   2   9.0675 0.641 10.937, 29.072 -0.99
CC075/UncJ m 36.76 0.0   1   0.0 0.0 36.76, 36.76 -0.95
CC078/TauUncJ f 84.46 52.66   3 30.404 0.6235 32.725, 138.0 -0.59
CC078/TauUncJ m 70.36 64.95   3 37.497 0.923 28.747, 145.2 -0.7
CC079/TauUncJ f 110.2 0.0   1   0.0 0.0 110.2, 110.2 -0.43
CC079/TauUncJ m 64.12 31.208   2   22.067 0.4867 42.055, 86.19 -0.75
CC080/TauUncJ f 307.9 298.7   2   211.2 0.97 96.71, 519.1 0.79
CC080/TauUncJ m 36.608 0.0   1   0.0 0.0 36.608, 36.608 -0.95
CC084/TauJ f 296.2 390.0   2   275.8 1.3169 20.39, 572.0 0.72
CC084/TauJ m 219.5 171.7   2   121.4 0.7826 98.01, 340.9 0.42
NOD/ShiLtJ f 93.68 127.1   8 44.946 1.357 13.723, 397.8 -0.53
NOD/ShiLtJ m 124.8 125.0   11 37.7 1.0017 13.477, 412.8 -0.29
NZO/HlLtJ f 109.4 138.5   3 79.98 1.2663 26.16, 269.3 -0.44
NZO/HlLtJ m 19.165 6.5082   2   4.602 0.3396 14.563, 23.767 -1.08
PWK/PhJ f 62.79 49.659   9 16.553 0.7909 15.485, 165.2 -0.73
PWK/PhJ m 136.3 169.4   8 59.88 1.2429 15.848, 524.9 -0.21
WSB/EiJ f 180.2 204.4   8 72.25 1.1341 35.002, 630.2 0.0
WSB/EiJ m 86.71 61.88   6 25.262 0.7136 32.182, 165.9 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 763.2 96.7523499541 954.0339955761 572.3660044239
129S1/SvImJ m 206.99975 83.7899929361 372.2668380746 41.7326619254
A/J f 442.0128333333 68.4142427483 576.9528456861 307.0728209806
A/J m 530.88 74.9440480158 678.6993773513 383.0606226487
C57BL/6J f 150.9221428571 44.7876351439 239.2611172693 62.583168445
C57BL/6J m 85.0340909091 50.5272668647 184.6938947887 -14.6257129705
CAST/EiJ f 111.4441 52.9934445615 215.9681841159 6.9200158841
CAST/EiJ m 221.13025 59.2484722007 337.9917286845 104.2687713155
CC001/UncJ f 276.6 96.7523499541 467.4339955761 85.7660044239
CC001/UncJ m 118.325 118.4969444014 352.047957369 -115.397957369
CC002/UncJ f 57.755 83.7899929361 223.0220880746 -107.5120880746
CC002/UncJ m 54.32875 83.7899929361 219.5958380746 -110.9383380746
CC003/UncJ f 90.3375 118.4969444014 324.060457369 -143.385457369
CC003/UncJ m 95.85 96.7523499541 286.6839955761 -94.9839955761
CC005/TauUncJ f 156.5 96.7523499541 347.3339955761 -34.3339955761
CC005/TauUncJ m 19.556 118.4969444014 253.278957369 -214.166957369
CC006/TauUncJ f 92.456 118.4969444014 326.178957369 -141.266957369
CC006/TauUncJ m 49.956 118.4969444014 283.678957369 -183.766957369
CC009/UncJ f 65.33 118.4969444014 299.052957369 -168.392957369
CC009/UncJ m 34.1925 118.4969444014 267.915457369 -199.530457369
CC011/UncJ f 143.7266666667 96.7523499541 334.5606622427 -47.1073289094
CC011/UncJ m 74.331 96.7523499541 265.1649955761 -116.5029955761
CC013/GeniUncJ f 360.3 118.4969444014 594.022957369 126.577042631
CC013/GeniUncJ m 211.25 118.4969444014 444.972957369 -22.472957369
CC016/GeniUncJ f 69.6356666667 96.7523499541 260.4696622427 -121.1983289094
CC016/GeniUncJ m 47.86325 83.7899929361 213.1303380746 -117.4038380746
CC017/UncJ f 24.6955 118.4969444014 258.418457369 -209.027457369
CC017/UncJ m 58.4166666667 96.7523499541 249.2506622427 -132.4173289094
CC018/UncJ f 190.665 96.7523499541 381.4989955761 -0.1689955761
CC018/UncJ m 39.2275 118.4969444014 272.950457369 -194.495457369
CC019/TauUncJ f 80.09625 83.7899929361 245.3633380746 -85.1708380746
CC019/TauUncJ m 121.97075 83.7899929361 287.2378380746 -43.2963380746
CC025/GeniUncJ f 312.7666666667 96.7523499541 503.6006622427 121.9326710906
CC025/GeniUncJ m 130.8726666667 96.7523499541 321.7066622427 -59.9613289094
CC027/GeniUncJ f 98.8415 118.4969444014 332.564457369 -134.881457369
CC027/GeniUncJ m 262.4325 83.7899929361 427.6995880746 97.1654119254
CC028/GeniUncJ f 571.6333333333 96.7523499541 762.4673289094 380.7993377573
CC028/GeniUncJ m 192.9033333333 96.7523499541 383.7373289094 2.0693377573
CC030/GeniUncJ f 49.08 118.4969444014 282.802957369 -184.642957369
CC030/GeniUncJ m 83.9265 118.4969444014 317.649457369 -149.796457369
CC033/GeniUncJ f 244.25 118.4969444014 477.972957369 10.527042631
CC033/GeniUncJ m 126.52 118.4969444014 360.242957369 -107.202957369
CC036/UncJ f 119.11 96.7523499541 309.9439955761 -71.7239955761
CC036/UncJ m 165.1366666667 96.7523499541 355.9706622427 -25.6973289094
CC037/TauUncJ f 188.1 118.4969444014 421.822957369 -45.622957369
CC037/TauUncJ m 101.999 96.7523499541 292.8329955761 -88.8349955761
CC040/TauUncJ f 79.249 96.7523499541 270.0829955761 -111.5849955761
CC040/TauUncJ m 180.7093333333 96.7523499541 371.5433289094 -10.1246622427
CC041/TauUncJ f 245.3073333333 96.7523499541 436.1413289094 54.4733377573
CC041/TauUncJ m 429.25 118.4969444014 662.972957369 195.527042631
CC043/GeniUncJ f 157.9935 118.4969444014 391.716457369 -75.729457369
CC043/GeniUncJ m 260.776 118.4969444014 494.498957369 27.053042631
CC057/UncJ f 35.4735 118.4969444014 269.196457369 -198.249457369
CC057/UncJ m 192.365 118.4969444014 426.087957369 -41.357957369
CC059/TauUncJ f 364.405 83.7899929361 529.6720880746 199.1379119254
CC059/TauUncJ m 435.8256 74.9440480158 583.6449773513 288.0062226487
CC061/GeniUncJ f 329.2133333333 96.7523499541 520.0473289094 138.3793377573
CC061/GeniUncJ m 186.7 118.4969444014 420.422957369 -47.022957369
CC078/TauUncJ f 84.4583333333 96.7523499541 275.2923289094 -106.3756622427
CC078/TauUncJ m 70.3623333333 96.7523499541 261.1963289094 -120.4716622427
CC084/TauJ f 296.195 118.4969444014 529.917957369 62.472042631
CC084/TauJ m 219.455 118.4969444014 453.177957369 -14.267957369
NOD/ShiLtJ f 93.6805 59.2484722007 210.5419786845 -23.1809786845
NOD/ShiLtJ m 124.8304545455 50.5272668647 224.4902584251 25.1706506658
NZO/HlLtJ f 109.3943333333 96.7523499541 300.2283289094 -81.4396622427
NZO/HlLtJ m 19.165 118.4969444014 252.887957369 -214.557957369
PWK/PhJ f 62.7886666667 55.8599952907 172.966725383 -47.3893920497
PWK/PhJ m 136.270375 59.2484722007 253.1318536845 19.4088963155
WSB/EiJ f 180.1915 59.2484722007 297.0529786845 63.3300213155
WSB/EiJ m 86.7106666667 68.4142427483 221.6506790194 -48.2293456861


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 485.099875 63.9956641849 611.3246984978 358.8750515022
A/J both 486.4464166667 50.7373603566 586.5206082126 386.3722251207
C57BL/6J both 117.9781168831 33.7599502317 184.5661242672 51.3901094991
CAST/EiJ both 166.287175 39.7450834211 244.6802380869 87.8941119131
CC001/UncJ both 197.4625 76.4894487072 348.3300202527 46.5949797473
CC002/UncJ both 56.041875 59.2484722007 172.9033536845 -60.8196036845
CC003/UncJ both 93.09375 76.4894487072 243.9612702527 -57.7737702527
CC005/TauUncJ both 88.028 76.4894487072 238.8955202527 -62.8395202527
CC006/TauUncJ both 71.206 83.7899929361 236.4730880746 -94.0610880746
CC009/UncJ both 49.76125 83.7899929361 215.0283380746 -115.5058380746
CC011/UncJ both 109.0288333333 68.4142427483 243.9688456861 -25.9111790194
CC013/GeniUncJ both 285.775 83.7899929361 451.0420880746 120.5079119254
CC016/GeniUncJ both 58.7494583333 63.9956641849 184.9742818311 -67.4753651644
CC017/UncJ both 41.5560833333 76.4894487072 192.4236035861 -109.3114369194
CC018/UncJ both 114.94625 76.4894487072 265.8137702527 -35.9212702527
CC019/TauUncJ both 101.0335 59.2484722007 217.8949786845 -15.8279786845
CC025/GeniUncJ both 221.8196666667 68.4142427483 356.7596790194 86.8796543139
CC027/GeniUncJ both 180.637 72.5642624656 323.7624966821 37.5115033179
CC028/GeniUncJ both 382.2683333333 68.4142427483 517.2083456861 247.3283209806
CC030/GeniUncJ both 66.50325 83.7899929361 231.7703380746 -98.7638380746
CC033/GeniUncJ both 185.385 83.7899929361 350.6520880746 20.1179119254
CC036/UncJ both 142.1233333333 68.4142427483 277.0633456861 7.1833209806
CC037/TauUncJ both 145.0495 76.4894487072 295.9170202527 -5.8180202527
CC040/TauUncJ both 129.9791666667 68.4142427483 264.9191790194 -4.9608456861
CC041/TauUncJ both 337.2786666667 76.4894487072 488.1461869194 186.4111464139
CC043/GeniUncJ both 209.38475 83.7899929361 374.6518380746 44.1176619254
CC057/UncJ both 113.91925 83.7899929361 279.1863380746 -51.3478380746
CC059/TauUncJ both 400.1153 56.2080360118 510.9798330135 289.2507669865
CC061/GeniUncJ both 257.9566666667 76.4894487072 408.8241869194 107.0891464139
CC078/TauUncJ both 77.4103333333 68.4142427483 212.3503456861 -57.5296790194
CC084/TauJ both 257.825 83.7899929361 423.0920880746 92.5579119254
NOD/ShiLtJ both 109.2554772727 38.933873924 186.0485135938 32.4624409516
NZO/HlLtJ both 64.2796666667 76.4894487072 215.1471869194 -86.5878535861
PWK/PhJ both 99.5295208333 40.7146181733 179.8348908637 19.224150803
WSB/EiJ both 133.4510833333 45.2517681117 222.7055119827 44.196654684




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA