Project measure / variable:   CSNA03   antici_resp_right_in_acq_JAX

ID, description, units MPD:110481   antici_resp_right_in_acq_JAX   total number of anticipatory responses in right flanking hole without prior successful nose poke in central hole (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of anticipatory responses in right flanking hole without prior successful nose poke in central hole (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means74.75   n 251.4   n
Median of the strain means54.46   n 53.33   n
SD of the strain means± 57.56 ± 558.3
Coefficient of variation (CV)0.7701 2.2207
Min–max range of strain means23.0   –   210.3   n 15.727   –   1629.0   n
Mean sample size per strain7.4   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1005725.0793 1005725.0793 0.9109 0.3423
strain 7 6867085.1166 981012.1595 0.8885 0.5188
sex:strain 7 8367087.8872 1195298.2696 1.0826 0.3806
Residuals 95 104890668.3134 1104112.298


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 53.67 57.42   3 33.153 1.07 5.0, 117.0 -0.37
129S1/SvImJ m 37.25 50.06   4 25.028 1.3438 1.0, 111.0 -0.38
A/J f 210.3 207.7   6 84.78 0.9874 7.0, 614.0 2.35
A/J m 144.6 95.25   5 42.596 0.6587 46.0, 289.0 -0.19
C57BL/6J f 73.15 57.29   13 15.889 0.7831 7.0, 208.0 -0.03
C57BL/6J m 15.727 14.276   11 4.3045 0.9078 2.0, 51.0 -0.42
CAST/EiJ f 53.0 47.749   10 15.1 0.9009 2.0, 127.0 -0.38
CAST/EiJ m 77.86 65.04   7 24.583 0.8354 13.0, 160.0 -0.31
NOD/ShiLtJ f 55.25 51.62   8 18.249 0.9342 3.0, 149.0 -0.34
NOD/ShiLtJ m 69.4 93.52   10 29.573 1.3475 3.0, 297.0 -0.33
NZO/HlLtJ f 23.0 30.512   3 17.616 1.3266 2.0, 58.0 -0.9
NZO/HlLtJ m 17.5 0.70711   2   0.5 0.0404 17.0, 18.0 -0.42
PWK/PhJ f 46.875 90.77   8 32.093 1.9365 2.0, 270.0 -0.48
PWK/PhJ m 1629.0 4170.0   7 1576.0 2.5593 3.0, 11084.0 2.47
WSB/EiJ f 82.75 99.48   8 35.171 1.2022 38.0, 328.0 0.14
WSB/EiJ m 20.0 20.12   6 8.2138 1.006 4.0, 50.0 -0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 53.6666666667 606.6608877113 1258.040802783 -1150.7074694497
129S1/SvImJ m 37.25 525.3837402404 1080.2685975377 -1005.7685975377
A/J f 210.3333333333 428.9740275813 1061.9544520669 -641.2877854002
A/J m 144.6 469.9175029802 1077.5041943563 -788.3041943563
C57BL/6J f 73.1538461538 291.4304638049 651.7164668746 -505.4087745669
C57BL/6J m 15.7272727273 316.8183158783 644.6911522537 -613.2366067991
CAST/EiJ f 53.0 332.2818529556 712.6628820267 -606.6628820267
CAST/EiJ m 77.8571428571 397.1527770151 866.3050919715 -710.5908062572
NOD/ShiLtJ f 55.25 371.5024054491 792.7755232226 -682.2755232226
NOD/ShiLtJ m 69.4 332.2818529556 729.0628820267 -590.2628820267
NZO/HlLtJ f 23.0 606.6608877113 1227.3741361164 -1181.3741361164
NZO/HlLtJ m 17.5 743.0048108983 1492.5510464452 -1457.5510464452
PWK/PhJ f 46.875 371.5024054491 784.4005232226 -690.6505232226
PWK/PhJ m 1629.1428571429 397.1527770151 2417.5908062572 840.6949080285
WSB/EiJ f 82.75 371.5024054491 820.2755232226 -654.7755232226
WSB/EiJ m 20.0 428.9740275813 871.6211187336 -831.6211187336


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 45.4583333333 401.2684597584 842.0769457439 -751.1602790772
A/J both 177.4666666667 318.1356534352 809.0457918997 -454.1124585664
C57BL/6J both 44.4405594406 215.2356618393 471.7373730971 -382.856254216
CAST/EiJ both 65.4285714286 258.911933915 579.4337480529 -448.5766051957
NOD/ShiLtJ both 62.325 249.2113897167 557.07216152 -432.42216152
NZO/HlLtJ both 20.25 479.6075431268 972.3913562813 -931.8913562813
PWK/PhJ both 838.0089285714 271.9119184338 1377.8223375072 298.1955196357
WSB/EiJ both 51.375 283.7396489715 614.6694228549 -511.9194228549




  GWAS USING LINEAR MIXED MODELS