Project measure / variable:   CSNA03   antici_resp_left_in_acq_JAX

ID, description, units MPD:110479   antici_resp_left_in_acq_JAX   total number of anticipatory responses in left flanking hole without prior successful nose poke in central hole (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of anticipatory responses in left flanking hole without prior successful nose poke in central hole (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means82.72   n 233.2   n
Median of the strain means50.36   n 44.839   n
SD of the strain means± 61.75 ± 475.7
Coefficient of variation (CV)0.7465 2.0399
Min–max range of strain means26.333   –   199.8   n 9.5   –   1400.0   n
Mean sample size per strain7.4   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1034618.8902 1034618.8902 0.9032 0.3444
strain 7 5990037.5958 855719.6565 0.747 0.6328
sex:strain 7 6460472.2944 922924.6135 0.8057 0.5846
Residuals 94 107678766.3923 1145518.7914


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 138.7 233.3   3 134.7 1.6821 2.0, 408.0 0.91
129S1/SvImJ m 99.0 113.1   2   80.0 1.1428 19.0, 179.0 -0.28
A/J f 199.8 122.9   6 50.19 0.6152 3.0, 303.0 1.9
A/J m 208.6 149.4   5 66.82 0.7163 30.0, 384.0 -0.05
C57BL/6J f 47.714 38.321   14 10.242 0.8031 1.0, 134.0 -0.57
C57BL/6J m 25.9 28.037   10 8.8662 1.0825 1.0, 72.0 -0.44
CAST/EiJ f 37.1 41.893   10 13.248 1.1292 5.0, 126.0 -0.74
CAST/EiJ m 50.86 60.04   7 22.693 1.1806 4.0, 174.0 -0.38
NOD/ShiLtJ f 53.0 52.85   7 19.974 0.9971 2.0, 142.0 -0.48
NOD/ShiLtJ m 38.818 50.89   11 15.344 1.311 1.0, 166.0 -0.41
NZO/HlLtJ f 26.333 34.79   3 20.086 1.3211 1.0, 66.0 -0.91
NZO/HlLtJ m 9.5 0.70711   2   0.5 0.0744 9.0, 10.0 -0.47
PWK/PhJ f 44.5 93.44   8 33.035 2.0997 1.0, 275.0 -0.62
PWK/PhJ m 1400.0 3908.0   8 1382.0 2.7909 1.0, 11072.0 2.45
WSB/EiJ f 114.6 208.2   8 73.6 1.816 5.0, 622.0 0.52
WSB/EiJ m 33.0 46.708   6 19.068 1.4154 1.0, 116.0 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 138.6666666667 617.9317091199 1365.584560597 -1088.2512272636
129S1/SvImJ m 99.0 756.8086916149 1601.6613982097 -1403.6613982097
A/J f 199.8333333333 436.9437018289 1067.3952960906 -667.7286294239
A/J m 208.6 478.647843703 1158.9665140712 -741.7665140712
C57BL/6J f 47.7142857143 286.046798295 615.6669091999 -520.2383377714
C57BL/6J m 25.9 338.4551360827 697.9106067124 -646.1106067124
CAST/EiJ f 37.1 338.4551360827 709.1106067124 -634.9106067124
CAST/EiJ m 50.8571428571 404.5312616222 854.0634457759 -752.3491600616
NOD/ShiLtJ f 53.0 404.5312616222 856.2063029188 -750.2063029188
NOD/ShiLtJ m 38.8181818182 322.7043103929 679.5551548947 -601.9187912583
NZO/HlLtJ f 26.3333333333 617.9317091199 1253.2512272636 -1200.584560597
NZO/HlLtJ m 9.5 756.8086916149 1512.1613982097 -1493.1613982097
PWK/PhJ f 44.5 378.4043458074 795.8306991049 -706.8306991049
PWK/PhJ m 1400.25 378.4043458074 2151.5806991049 648.9193008951
WSB/EiJ f 114.625 378.4043458074 865.9556991049 -636.7056991049
WSB/EiJ m 33.0 436.9437018289 900.5619627572 -834.5619627572


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 118.8333333333 488.5179098149 1088.7970950425 -851.1304283758
A/J both 204.2166666667 324.0461220449 847.6178382329 -439.1845048995
C57BL/6J both 36.8071428571 221.5708972065 476.7413532961 -403.1270675818
CAST/EiJ both 43.9785714286 263.7221173747 567.6050176148 -479.6478747576
NOD/ShiLtJ both 45.9090909091 258.7390642983 559.6415684 -467.8233865818
NZO/HlLtJ both 17.9166666667 488.5179098149 987.8804283758 -952.0470950425
PWK/PhJ both 722.375 267.5722789509 1253.6460322507 191.1039677493
WSB/EiJ both 73.8125 289.0110929938 647.6508000987 -500.0258000987




  GWAS USING LINEAR MIXED MODELS