Project measure / variable:   CSNA03   retrieval_in_acq_JAX

ID, description, units MPD:110475   retrieval_in_acq_JAX   retrieval (reversal learning assay), founders    acquisition   informational
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - retrieval (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means9946.0   None 9210.0   None
Median of the strain means10278.0   None 8698.0   None
SD of the strain means± 4536.0 ± 4554.0
Coefficient of variation (CV)0.456 0.4944
Min–max range of strain means3118.0   –   17004.0   None 3050.0   –   15664.0   None
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16377283.5029 16377283.5029 0.3736 0.5424
strain 7 1516489987.0453 216641426.7208 4.9419 < 0.0001
sex:strain 7 121444885.022 17349269.2889 0.3958 0.9028
Residuals 100 4383798435.4212 43837984.3542


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10336.0 11236.0   3 6487.0 1.0871 3653.0, 23308.0 0.09
129S1/SvImJ m 6267.0 5286.0   4 2643.0 0.8434 1714.0, 13871.0 -0.65
A/J f 17004.0 8332.0   6 3401.0 0.49 3058.0, 26880.0 1.56
A/J m 15664.0 5951.0   5 2661.0 0.3799 9044.0, 24990.0 1.42
C57BL/6J f 12198.0 4836.0   14 1292.0 0.3964 2392.0, 18571.0 0.5
C57BL/6J m 11710.0 8241.0   11 2485.0 0.7038 2432.0, 31870.0 0.55
CAST/EiJ f 13199.0 6132.0   10 1939.0 0.4645 3324.0, 23767.0 0.72
CAST/EiJ m 14150.0 8142.0   8 2879.0 0.5754 3665.0, 27541.0 1.08
NOD/ShiLtJ f 4378.0 2251.0   8 795.8 0.5141 1677.0, 7685.0 -1.23
NOD/ShiLtJ m 5695.0 3957.0   11 1193.0 0.6948 1815.0, 12653.0 -0.77
NZO/HlLtJ f 3118.0 1257.0   3 725.8 0.4031 1850.0, 4364.0 -1.51
NZO/HlLtJ m 3050.0 1944.0   2   1374.0 0.6374 1675.0, 4424.0 -1.35
PWK/PhJ f 9118.0 6757.0   9 2252.0 0.7411 2259.0, 21747.0 -0.18
PWK/PhJ m 11128.0 11508.0   8 4069.0 1.0342 4000.0, 38310.0 0.42
WSB/EiJ f 10219.0 5478.0   8 1937.0 0.5361 5667.0, 22441.0 0.06
WSB/EiJ m 6016.0 3788.0   6 1547.0 0.6296 2775.0, 11969.0 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10336.0 3822.6511024947 17920.0309126022 2751.9690873978
129S1/SvImJ m 6267.25 3310.512964565 12835.2134334 -300.7134334
A/J f 17004.3333333334 2703.0225166843 22367.0530203628 11641.6136463039
A/J m 15663.6 2961.0128116647 21538.1650843261 9789.0349156739
C57BL/6J f 12198.4285714286 1769.5436125537 15709.1526995203 8687.7044433368
C57BL/6J m 11710.1818181818 1996.3144303762 15670.8127900658 7749.5508462978
CAST/EiJ f 13199.4 2093.7522383084 17353.3448076487 9045.4551923513
CAST/EiJ m 14150.125 2340.8861664499 18794.3764823424 9505.8735176576
NOD/ShiLtJ f 4378.0 2340.8861664499 9022.2514823424 -266.2514823424
NOD/ShiLtJ m 5695.0909090909 1996.3144303762 9655.7218809749 1734.4599372069
NZO/HlLtJ f 3118.3333333333 3822.6511024947 10702.3642459355 -4465.6975792689
NZO/HlLtJ m 3049.5 4681.7723328998 12338.0029646848 -6239.0029646848
PWK/PhJ f 9117.5555555556 2207.0086430434 13496.1978444889 4738.9132666222
PWK/PhJ m 11127.5 2340.8861664499 15771.7514823424 6483.2485176576
WSB/EiJ f 10219.0 2340.8861664499 14863.2514823424 5574.7485176576
WSB/EiJ m 6016.5 2703.0225166843 11379.2196870294 653.7803129706


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8301.625 2528.446041542 13317.9899325429 3285.2600674571
A/J both 16333.9666666667 2004.6151498819 20311.0660296333 12356.8673037001
C57BL/6J both 11954.3051948052 1333.8436847751 14600.6130755615 9307.9973140488
CAST/EiJ both 13674.7625 1570.3141787313 16790.2211057365 10559.3038942635
NOD/ShiLtJ both 5036.5454545455 1538.2635786175 8088.4165825048 1984.6743265861
NZO/HlLtJ both 3083.9166666667 3022.0710460093 9079.6195489037 -2911.7862155704
PWK/PhJ both 10122.5277777778 1608.6201536367 13313.984346716 6931.0712088396
WSB/EiJ both 8117.75 1787.8813418386 11664.8556607075 4570.6443392925




  GWAS USING LINEAR MIXED MODELS