Project measure / variable:   CSNA03   omit_in_acq_JAX

ID, description, units MPD:110463   omit_in_acq_JAX   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means41.592   n 32.353   n
Median of the strain means25.107   n 20.1   n
SD of the strain means± 42.428 ± 31.204
Coefficient of variation (CV)1.0201 0.9645
Min–max range of strain means4.4286   –   123.3   n 2.0   –   96.0   n
Mean sample size per strain7.0   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8.2868 8.2868 0.0107 0.9179
strain 6 76195.7785 12699.2964 16.3648 < 0.0001
sex:strain 6 15491.7775 2581.9629 3.3272 0.0052
Residuals 91 70617.0714 776.0118


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 123.3 16.773   3 9.6839 0.136 104.0, 134.0 1.93
129S1/SvImJ m 48.25 47.12   4 23.56 0.9766 8.0, 98.0 0.51
A/J f 92.17 42.555   6 17.373 0.4617 10.0, 129.0 1.19
A/J m 96.0 34.183   5 15.287 0.3561 63.0, 142.0 2.04
C57BL/6J f 21.214 18.419   14 4.9227 0.8682 2.0, 64.0 -0.48
C57BL/6J m 14.3 14.275   10 4.5143 0.9983 1.0, 46.0 -0.58
CAST/EiJ f 18.125 12.392   8 4.3811 0.6837 2.0, 40.0 -0.55
CAST/EiJ m 50.0 62.19   8 21.987 1.2438 1.0, 176.0 0.57
NOD/ShiLtJ f 14.75 21.94   8 7.7569 1.4874 1.0, 67.0 -0.63
NOD/ShiLtJ m 25.9 20.766   10 6.5667 0.8018 3.0, 64.0 -0.21
NZO/HlLtJ f 29.0 22.627   2   16.0 0.7803 13.0, 45.0 -0.3
NZO/HlLtJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.97
PWK/PhJ f 4.4286 3.994   7 1.5096 0.9019 1.0, 13.0 -0.88
PWK/PhJ m 8.375 10.07   8 3.5604 1.2024 1.0, 28.0 -0.77
WSB/EiJ f 29.75 31.689   8 11.204 1.0652 2.0, 103.0 -0.28
WSB/EiJ m 14.0 6.1319   6 2.5033 0.438 7.0, 22.0 -0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 123.3333333333 16.0832394533 155.2807127525 91.3859539142
129S1/SvImJ m 48.25 13.9284939417 75.9172421613 20.5827578387
A/J f 92.1666666667 11.3725676809 114.7568752951 69.5764580382
A/J m 96.0 12.4580237112 120.7463336891 71.2536663109
C57BL/6J f 21.2142857143 7.4450931777 36.0030487149 6.4255227136
C57BL/6J m 14.3 8.8091530464 31.798300361 -3.198300361
CAST/EiJ f 18.125 9.8489325179 37.688694549 -1.438694549
CAST/EiJ m 50.0 9.8489325179 69.563694549 30.436305451
NOD/ShiLtJ f 14.75 9.8489325179 34.313694549 -4.813694549
NOD/ShiLtJ m 25.9 8.8091530464 43.398300361 8.401699639
PWK/PhJ f 4.4285714286 10.528951745 25.3430406348 -16.4858977777
PWK/PhJ m 8.375 9.8489325179 27.938694549 -11.188694549
WSB/EiJ f 29.75 9.8489325179 49.313694549 10.186305451
WSB/EiJ m 14.0 11.3725676809 36.5902086284 -8.5902086284


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 85.7916666667 10.6380629675 106.9228719125 64.6604614208
A/J both 94.0833333333 8.434121923 110.8366804387 77.329986228
C57BL/6J both 17.7571428571 5.7669443776 29.2124694197 6.3018162946
CAST/EiJ both 34.0625 6.9642469709 47.8961210807 20.2288789193
NOD/ShiLtJ both 20.325 6.6068647848 33.4487252708 7.2012747292
PWK/PhJ both 6.4017857143 7.208680472 20.7209439174 -7.9173724889
WSB/EiJ both 21.875 7.522246463 36.817018524 6.932981476




  GWAS USING LINEAR MIXED MODELS