Project measure / variable:   CSNA03   days_criteria_in_acq_JAX

ID, description, units MPD:110457   days_criteria_in_acq_JAX   number of days to meet criteria, (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - number of days to meet criteria, (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means4.4386   n 3.4403   n
Median of the strain means2.6643   n 2.6478   n
SD of the strain means± 3.9485 ± 2.5841
Coefficient of variation (CV)0.8896 0.7511
Min–max range of strain means1.5556   –   13.0   n 1.0   –   9.2   n
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.373 2.373 0.3958 0.5307
strain 7 510.7523 72.9646 12.1699 < 0.0001
sex:strain 7 173.2838 24.7548 4.1289 0.0005
Residuals 100 599.5478 5.9955


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.0 5.2915   3 3.0551 0.407 7.0, 17.0 2.17
129S1/SvImJ m 4.25 4.717   4 2.3585 1.1099 1.0, 11.0 0.31
A/J f 7.6667 3.4448   6 1.4063 0.4493 1.0, 10.0 0.82
A/J m 9.2 4.0866   5 1.8276 0.4442 5.0, 14.0 2.23
C57BL/6J f 2.9286 1.4917   14 0.39868 0.5094 1.0, 6.0 -0.38
C57BL/6J m 1.8182 0.98165   11 0.29598 0.5399 1.0, 4.0 -0.63
CAST/EiJ f 2.4 1.2649   10 0.4 0.527 1.0, 5.0 -0.52
CAST/EiJ m 4.125 3.3139   8 1.1717 0.8034 1.0, 9.0 0.26
NOD/ShiLtJ f 2.125 2.031   8 0.71807 0.9558 1.0, 7.0 -0.59
NOD/ShiLtJ m 2.5455 1.9164   11 0.57783 0.7529 1.0, 7.0 -0.35
NZO/HlLtJ f 2.3333 2.3094   3 1.3333 0.9897 1.0, 5.0 -0.53
NZO/HlLtJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.94
PWK/PhJ f 1.5556 0.88192   9 0.29397 0.5669 1.0, 3.0 -0.73
PWK/PhJ m 2.75 2.7646   8 0.97742 1.0053 1.0, 9.0 -0.27
WSB/EiJ f 3.5 3.3806   8 1.1952 0.9659 1.0, 11.0 -0.24
WSB/EiJ m 1.8333 0.98319   6 0.40139 0.5363 1.0, 3.0 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.0 1.4136804959 15.8047018402 10.1952981598
129S1/SvImJ m 4.25 1.2242832223 6.6789430436 1.8210569564
A/J f 7.6666666667 0.9996230651 9.6498903571 5.6834429763
A/J m 9.2 1.0950322035 11.3725127036 7.0274872964
C57BL/6J f 2.9285714286 0.6544069089 4.2268960973 1.6302467598
C57BL/6J m 1.8181818182 0.738270561 3.2828895842 0.3534740522
CAST/EiJ f 2.4 0.7743046967 3.9361984649 0.8638015351
CAST/EiJ m 4.125 0.8656989686 5.8425220973 2.4074779027
NOD/ShiLtJ f 2.125 0.8656989686 3.8425220973 0.4074779027
NOD/ShiLtJ m 2.5454545455 0.738270561 4.0101623114 1.0807467795
NZO/HlLtJ f 2.3333333333 1.4136804959 5.1380351735 -0.4713685068
NZO/HlLtJ m 1.0 1.7313979371 4.4350441945 -2.4350441945
PWK/PhJ f 1.5555555556 0.8161888149 3.174850918 -0.0637398069
PWK/PhJ m 2.75 0.8656989686 4.4675220973 1.0324779027
WSB/EiJ f 3.5 0.8656989686 5.2175220973 1.7824779027
WSB/EiJ m 1.8333333333 0.9996230651 3.8165570237 -0.1498903571


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.625 0.9350617564 10.4801358927 6.7698641073
A/J both 8.4333333333 0.7413403063 9.9041313866 6.9625352801
C57BL/6J both 2.3733766234 0.4932777675 3.3520256648 1.3947275819
CAST/EiJ both 3.2625 0.5807285225 4.4146488487 2.1103511513
NOD/ShiLtJ both 2.3352272727 0.568875673 3.4638604056 1.2065941399
NZO/HlLtJ both 1.6666666667 1.1176125627 3.8839781598 -0.5506448265
PWK/PhJ both 2.1527777778 0.5948947146 3.333031948 0.9725236076
WSB/EiJ both 2.6666666667 0.6611885088 3.9784458364 1.3548874969




  GWAS USING LINEAR MIXED MODELS