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Project measure / variable:   Hadsell2   copper

ID, description, units MPD:110060   copper   milk copper (Cu) concentration   [µM]  
Data set, strains Hadsell2   inbred   31 strains     sex: f     age: 14-20wks
Procedure mineral quantification
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  STRAIN COMPARISON PLOT
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Hadsell2 - milk copper (Cu) concentration



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested31 strains
Mean of the strain means25.556   µM
Median of the strain means25.636   µM
SD of the strain means± 5.4423
Coefficient of variation (CV)0.213
Min–max range of strain means11.823   –   36.783   µM
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 6964.1338 232.1378 6.9569 < 0.0001
Residuals 208 6940.5626 33.3681


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.147 3.6299   6 1.4819 0.1503 19.67, 28.96 -0.26
A/J f 27.17 2.0875   4 1.0437 0.0768 25.5, 30.22 0.3
AKR/J f 30.047 5.0867   7 1.9226 0.1693 24.0, 40.6 0.83
BALB/cByJ f 25.636 6.3365   9 2.1122 0.2472 15.34, 37.3 0.01
BTBR T+ Itpr3tf/J f 31.793 10.288   7 3.8884 0.3236 18.89, 48.24 1.15
BUB/BnJ f 26.776 4.6265   7 1.7487 0.1728 18.33, 33.44 0.22
C3H/HeJ f 27.088 5.9518   9 1.9839 0.2197 19.2, 37.54 0.28
C57BL/6J f 19.405 6.4314   10 2.0338 0.3314 8.73, 29.27 -1.13
C57L/J f 24.335 5.7255   8 2.0243 0.2353 16.76, 30.53 -0.22
C58/J f 23.83 4.7062   6 1.9213 0.1975 19.91, 30.69 -0.32
CBA/J f 34.58 2.7489   7 1.039 0.0795 30.77, 39.19 1.66
CE/J f 29.399 7.2408   7 2.7368 0.2463 20.62, 39.9 0.71
CZECHII/EiJ f 27.345 7.5165   2   5.315 0.2749 22.03, 32.66 0.33
DBA/1J f 33.59 5.4258   7 2.0508 0.1615 24.87, 42.34 1.48
DBA/2J f 27.818 7.5368   6 3.0769 0.2709 17.47, 40.29 0.42
FVB/NJ f 36.783 11.447   7 4.3265 0.3112 21.4, 57.29 2.06
I/LnJ f 25.038 2.4155   5 1.0802 0.0965 22.19, 27.62 -0.1
KK/HlJ f 22.25 2.5593   4 1.2797 0.115 19.75, 25.1 -0.61
LG/J f 31.126 3.8565   9 1.2855 0.1239 25.57, 35.96 1.02
LP/J f 25.652 2.6629   11 0.80288 0.1038 22.82, 31.16 0.02
MA/MyJ f 28.242 8.3608   9 2.7869 0.296 16.76, 40.68 0.49
NOD/ShiLtJ f 11.823 3.5223   8 1.2453 0.2979 7.87, 16.6 -2.52
NON/ShiLtJ f 23.471 4.3506   7 1.6444 0.1854 17.0, 29.82 -0.38
NZW/LacJ f 18.139 4.1991   8 1.4846 0.2315 13.14, 25.81 -1.36
PL/J f 17.224 3.6699   8 1.2975 0.2131 12.12, 23.45 -1.53
QSi5 f 20.924 5.6579   14 1.5121 0.2704 12.51, 36.04 -0.85
RIIIS/J f 23.003 4.4724   12 1.2911 0.1944 16.29, 31.63 -0.47
SEA/GnJ f 22.084 5.5111   11 1.6616 0.2496 13.69, 30.85 -0.64
SJL/J f 19.974 2.8305   5 1.2658 0.1417 16.84, 23.06 -1.03
SM/J f 22.161 7.5864   8 2.6822 0.3423 15.74, 39.35 -0.62
SWR/J f 31.396 6.1443   11 1.8526 0.1957 18.73, 44.3 1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.1466666667 2.3582511037 28.7958046259 19.4975287074
A/J f 27.17 2.8882559447 32.864007872 21.475992128
AKR/J f 30.0471428571 2.1833162721 34.3514082264 25.7428774878
BALB/cByJ f 25.6355555556 1.9255039631 29.4315608036 21.8395503076
BTBR T+ Itpr3tf/J f 31.7928571429 2.1833162721 36.0971225122 27.4885917736
BUB/BnJ f 26.7757142857 2.1833162721 31.079979655 22.4714489164
C3H/HeJ f 27.0877777778 1.9255039631 30.8837830258 23.2917725298
C57BL/6J f 19.405 1.8266934501 23.0062067781 15.8037932219
C57L/J f 24.335 2.0423053643 28.3612715784 20.3087284216
C58/J f 23.83 2.3582511037 28.4791379593 19.1808620407
CBA/J f 34.58 2.1833162721 38.8842653693 30.2757346307
CE/J f 29.3985714286 2.1833162721 33.7028367979 25.0943060593
CZECHII/EiJ f 27.345 4.0846107286 35.3975431568 19.2924568432
DBA/1J f 33.59 2.1833162721 37.8942653693 29.2857346307
DBA/2J f 27.8183333333 2.3582511037 32.4674712926 23.1691953741
FVB/NJ f 36.7828571429 2.1833162721 41.0871225122 32.4785917736
I/LnJ f 25.038 2.5833346515 30.1308754665 19.9451245335
KK/HlJ f 22.25 2.8882559447 27.944007872 16.555992128
LG/J f 31.1255555556 1.9255039631 34.9215608036 27.3295503076
LP/J f 25.6518181818 1.7416838667 29.0854341209 22.2182022428
MA/MyJ f 28.2422222222 1.9255039631 32.0382274702 24.4462169742
NOD/ShiLtJ f 11.8225 2.0423053643 15.8487715784 7.7962284216
NON/ShiLtJ f 23.4714285714 2.1833162721 27.7756939407 19.1671632021
NZW/LacJ f 18.13875 2.0423053643 22.1650215784 14.1124784216
PL/J f 17.22375 2.0423053643 21.2500215784 13.1974784216
QSi5 f 20.9242857143 1.5438377415 23.9678609449 17.8807104836
RIIIS/J f 23.0033333333 1.6675353471 26.290770311 19.7158963557
SEA/GnJ f 22.0836363636 1.7416838667 25.5172523027 18.6500204246
SJL/J f 19.974 2.5833346515 25.0668754665 14.8811245335
SM/J f 22.16125 2.0423053643 26.1875215784 18.1349784216
SWR/J f 31.3963636364 1.7416838667 34.8299795754 27.9627476973




  GWAS USING LINEAR MIXED MODELS