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Project measure / variable:   Wahlsten1   defecation_OFT

ID, description, units MPD:10832   defecation_OFT   number of fecal boli, within 5 min trial   [n]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - number of fecal boli, within 5 min trial



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means1.96   n 2.98   n
Median of the strain means1.60   n 2.83   n
SD of the strain means± 0.994 ± 1.49
Coefficient of variation (CV)0.508 0.502
Min–max range of strain means0.375   –   3.80   n 0.200   –   5.70   n
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 97.0014 97.0014 22.7465 < 0.0001
strain 20 517.5566 25.8778 6.0683 < 0.0001
sex:strain 20 110.2397 5.512 1.2925 0.1802
Residuals 354 1509.6165 4.2645


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.1 1.29   10 0.407 0.613 0.14
129S1/SvImJ m 2.7 1.95   10 0.616 0.721 -0.19
A/J f 2.88 0.641   8 0.227 0.223 2.0, 4.0 0.93
A/J m 4.67 1.87   9 0.624 0.401 2.0, 7.0 1.13
AKR/J f 3.5 2.32   10 0.734 0.663 1.55
AKR/J m 3.25 1.75   8 0.62 0.539 2.0, 7.0 0.18
BALB/cByJ f 1.5 1.27   10 0.401 0.846 -0.46
BALB/cByJ m 5.7 3.86   10 1.22 0.677 1.82
BTBR T+ Itpr3tf/J f 1.17 0.835   12 0.241 0.716 -0.79
BTBR T+ Itpr3tf/J m 2.83 1.47   6 0.601 0.52 1.0, 5.0 -0.1
C3H/HeJ f 1.6 1.78   10 0.562 1.11 -0.36
C3H/HeJ m 2.25 1.58   8 0.559 0.703 -0.49
C57BL/6J f 0.375 0.744   8 0.263 1.98 -1.59
C57BL/6J m 0.3 0.949   10 0.3 3.16 -1.79
C57L/J f 2.3 2.26   10 0.716 0.984 0.35
C57L/J m 3.75 2.43   8 0.861 0.649 0.52
C58/J f 2.0 1.94   10 0.615 0.972 0.04
C58/J m 3.7 1.16   10 0.367 0.313 1.0, 5.0 0.48
CAST/EiJ f 3.0 2.26   10 0.715 0.754 1.05
CAST/EiJ m 3.78 1.99   9 0.662 0.526 1.0, 8.0 0.54
DBA/2J f 0.8 1.32   10 0.416 1.65 -1.16
DBA/2J m 1.88 4.22   8 1.49 2.25 -0.73
FVB/NJ f 1.4 2.07   10 0.653 1.48 -0.56
FVB/NJ m 2.36 3.41   11 1.03 1.44 -0.41
MOLF/EiJ f 3.12 2.47   8 0.875 0.792 1.17
MOLF/EiJ m 2.57 1.81   7 0.685 0.705 -0.27
NOD/ShiLtJ f 2.58 2.15   12 0.621 0.833 0.63
NOD/ShiLtJ m 3.33 1.92   12 0.555 0.577 0.24
NZB/BlNJ f 1.0 0.894   6 0.365 0.894 -0.96
NZB/BlNJ m 1.83 1.4   12 0.405 0.766 -0.77
PERA/EiJ f 0.7 1.06   10 0.335 1.51 -1.26
PERA/EiJ m 1.17 1.7   12 0.49 1.45 -1.21
PL/J f 1.58 1.56   12 0.452 0.988 -0.38
PL/J m 2.29 1.8   7 0.68 0.787 -0.46
SJL/J f 3.12 3.23   8 1.14 1.03 1.17
SJL/J m 4.25 2.42   12 0.698 0.569 0.85
SM/J f 1.0 1.88   14 0.503 1.88 -0.96
SM/J m 0.2 0.632   10 0.2 3.16 -1.86
SPRET/EiJ f 1.57 1.9   7 0.719 1.21 -0.39
SPRET/EiJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.69
SWR/J f 3.8 2.57   10 0.814 0.677 1.85
SWR/J m 5.7 3.16   10 1.0 0.555 1.82


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.1 0.653 3.3843 0.8157
129S1/SvImJ m 2.7 0.653 3.9843 1.4157
A/J f 2.875 0.7301 4.3109 1.4391
A/J m 4.6667 0.6884 6.0204 3.3129
AKR/J f 3.5 0.653 4.7843 2.2157
AKR/J m 3.25 0.7301 4.6859 1.8141
BALB/cByJ f 1.5 0.653 2.7843 0.2157
BALB/cByJ m 5.7 0.653 6.9843 4.4157
BTBR T+ Itpr3tf/J f 1.1667 0.5961 2.3391 0.0
BTBR T+ Itpr3tf/J m 2.8333 0.8431 4.4914 1.1753
C3H/HeJ f 1.6 0.653 2.8843 0.3157
C3H/HeJ m 2.25 0.7301 3.6859 0.8141
C57BL/6J f 0.375 0.7301 1.8109 0.0
C57BL/6J m 0.3 0.653 1.5843 0.0
C57L/J f 2.3 0.653 3.5843 1.0157
C57L/J m 3.75 0.7301 5.1859 2.3141
C58/J f 2.0 0.653 3.2843 0.7157
C58/J m 3.7 0.653 4.9843 2.4157
CAST/EiJ f 3.0 0.653 4.2843 1.7157
CAST/EiJ m 3.7778 0.6884 5.1316 2.424
DBA/2J f 0.8 0.653 2.0843 0.0
DBA/2J m 1.875 0.7301 3.3109 0.4391
FVB/NJ f 1.4 0.653 2.6843 0.1157
FVB/NJ m 2.3636 0.6226 3.5882 1.1391
MOLF/EiJ f 3.125 0.7301 4.5609 1.6891
MOLF/EiJ m 2.5714 0.7805 4.1065 1.0364
NOD/ShiLtJ f 2.5833 0.5961 3.7557 1.4109
NOD/ShiLtJ m 3.3333 0.5961 4.5057 2.1609
NZB/BlNJ f 1.0 0.8431 2.658 0.0
NZB/BlNJ m 1.8333 0.5961 3.0057 0.6609
PERA/EiJ f 0.7 0.653 1.9843 0.0
PERA/EiJ m 1.1667 0.5961 2.3391 0.0
PL/J f 1.5833 0.5961 2.7557 0.4109
PL/J m 2.2857 0.7805 3.8207 0.7507
SJL/J f 3.125 0.7301 4.5609 1.6891
SJL/J m 4.25 0.5961 5.4224 3.0776
SM/J f 1.0 0.5519 2.0854 0.0
SM/J m 0.2 0.653 1.4843 0.0
SPRET/EiJ f 1.5714 0.7805 3.1065 0.0364
SPRET/EiJ m 4.0 1.4602 6.8718 1.1282
SWR/J f 3.8 0.653 5.0843 2.5157
SWR/J m 5.7 0.653 6.9843 4.4157


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.4 0.4618 3.3081 1.4919
A/J both 3.7708 0.5017 4.7576 2.7841
AKR/J both 3.375 0.4898 4.3382 2.4118
BALB/cByJ both 3.6 0.4618 4.5081 2.6919
BTBR T+ Itpr3tf/J both 2.0 0.5163 3.0153 0.9847
C3H/HeJ both 1.925 0.4898 2.8882 0.9618
C57BL/6J both 0.3375 0.4898 1.3007 0.0
C57L/J both 3.025 0.4898 3.9882 2.0618
C58/J both 2.85 0.4618 3.7581 1.9419
CAST/EiJ both 3.3889 0.4744 4.3219 2.4559
DBA/2J both 1.3375 0.4898 2.3007 0.3743
FVB/NJ both 1.8818 0.4511 2.7691 0.9946
MOLF/EiJ both 2.8482 0.5344 3.8992 1.7972
NOD/ShiLtJ both 2.9583 0.4215 3.7873 2.1293
NZB/BlNJ both 1.4167 0.5163 2.432 0.4013
PERA/EiJ both 0.9333 0.4421 1.8028 0.0639
PL/J both 1.9345 0.4911 2.9003 0.9688
SJL/J both 3.6875 0.4713 4.6144 2.7606
SM/J both 0.6 0.4275 1.4408 0.0
SPRET/EiJ both 2.7857 0.8279 4.4139 1.1576
SWR/J both 4.75 0.4618 5.6581 3.8419




  GWAS USING LINEAR MIXED MODELS