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Project measure / variable:   Tordoff3   BMC

ID, description, units MPD:10327   BMC   bone mineral content (BMC)   [g]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 14-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Tordoff3 - bone mineral content (BMC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means0.455   g 0.434   g
Median of the strain means0.477   g 0.437   g
SD of the strain means± 0.0975 ± 0.0863
Coefficient of variation (CV)0.214 0.199
Min–max range of strain means0.294   –   0.622   g 0.208   –   0.587   g
Mean sample size per strain9.7   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1014 0.1014 27.3732 < 0.0001
strain 39 6.0065 0.154 41.5872 < 0.0001
sex:strain 39 0.5605 0.0144 3.881 < 0.0001
Residuals 707 2.6183 0.0037


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.545 0.0733   10 0.0232 0.135 0.434, 0.655 0.92
129S1/SvImJ m 0.502 0.0668   9 0.0223 0.133 0.403, 0.623 0.79
A/J f 0.382 0.0465   10 0.0147 0.122 0.307, 0.475 -0.75
A/J m 0.412 0.113   10 0.0358 0.275 0.317, 0.717 -0.26
AKR/J f 0.597 0.0788   9 0.0263 0.132 0.435, 0.675 1.45
AKR/J m 0.553 0.063   10 0.0199 0.114 0.451, 0.634 1.38
BALB/cByJ f 0.509 0.0521   9 0.0174 0.102 0.425, 0.584 0.55
BALB/cByJ m 0.469 0.0288   10 0.00911 0.0614 0.429, 0.524 0.4
BTBR T+ Itpr3tf/J f 0.622 0.0373   10 0.0118 0.0599 0.571, 0.68 1.71
BTBR T+ Itpr3tf/J m 0.587 0.0206   10 0.0065 0.035 0.564, 0.622 1.77
BUB/BnJ f 0.528 0.0487   10 0.0154 0.0922 0.471, 0.597 0.75
BUB/BnJ m 0.51 0.0529   9 0.0176 0.104 0.422, 0.585 0.88
C3H/HeJ f 0.547 0.044   10 0.0139 0.0803 0.452, 0.591 0.94
C3H/HeJ m 0.544 0.024   10 0.00759 0.0441 0.511, 0.593 1.27
C57BL/10J f 0.43 0.0345   10 0.0109 0.0803 0.389, 0.481 -0.26
C57BL/10J m 0.408 0.0206   10 0.00651 0.0505 0.383, 0.451 -0.3
C57BL/6J f 0.508 0.165   9 0.0551 0.326 0.401, 0.944 0.54
C57BL/6J m 0.455 0.0287   9 0.00957 0.063 0.417, 0.496 0.24
C57BLKS/J f 0.378 0.0189   10 0.00596 0.0499 0.335, 0.397 -0.79
C57BLKS/J m 0.38 0.0282   8 0.00997 0.0743 0.335, 0.428 -0.63
C57BR/cdJ f 0.61 0.0407   15 0.0105 0.0668 0.521, 0.7 1.59
C57BR/cdJ m 0.482 0.0478   13 0.0133 0.0992 0.41, 0.561 0.56
C57L/J f 0.571 0.112   10 0.0354 0.196 0.261, 0.654 1.19
C57L/J m 0.483 0.0336   10 0.0106 0.0695 0.425, 0.539 0.57
C58/J f 0.485 0.045   9 0.015 0.0928 0.388, 0.543 0.31
C58/J m 0.522 0.0377   9 0.0126 0.0722 0.439, 0.554 1.02
CAST/EiJ f 0.342 0.034   10 0.0108 0.0995 0.283, 0.393 -1.16
CAST/EiJ m 0.347 0.021   10 0.00665 0.0607 0.318, 0.37 -1.01
CBA/J f 0.526 0.0425   10 0.0134 0.0809 0.476, 0.607 0.73
CBA/J m 0.471 0.0354   10 0.0112 0.0751 0.403, 0.526 0.43
CE/J f 0.468 0.0792   9 0.0264 0.169 0.366, 0.553 0.13
CE/J m 0.382 0.0195   8 0.00691 0.0512 0.358, 0.406 -0.6
CZECHII/EiJ f 0.3 0.0509   9 0.017 0.17 0.226, 0.391 -1.59
CZECHII/EiJ m 0.328 0.0355   10 0.0112 0.108 0.279, 0.378 -1.23
DBA/2J f 0.432 0.0385   10 0.0122 0.0892 0.378, 0.493 -0.24
DBA/2J m 0.439 0.149   10 0.047 0.339 0.345, 0.856 0.06
FVB/NJ f 0.508 0.118   10 0.0373 0.232 0.436, 0.832 0.54
FVB/NJ m 0.492 0.0352   10 0.0111 0.0714 0.465, 0.568 0.67
I/LnJ f 0.437 0.0383   10 0.0121 0.0878 0.389, 0.497 -0.19
I/LnJ m 0.435 0.0243   10 0.00769 0.0559 0.392, 0.478 0.01
JF1/MsJ f 0.321 0.0389   10 0.0123 0.121 0.244, 0.377 -1.38
JF1/MsJ m 0.208 0.0407   10 0.0129 0.195 0.152, 0.289 -2.62
KK/HlJ f 0.521 0.0279   10 0.00882 0.0536 0.475, 0.578 0.67
KK/HlJ m 0.456 0.0609   10 0.0193 0.134 0.298, 0.527 0.25
LP/J f 0.58 0.069   10 0.0218 0.119 0.45, 0.664 1.28
LP/J m 0.503 0.0497   10 0.0157 0.0989 0.398, 0.566 0.8
MA/MyJ f 0.398 0.0295   8 0.0104 0.0741 0.345, 0.435 -0.59
MA/MyJ m 0.355 0.0321   15 0.00829 0.0904 0.273, 0.396 -0.92
MOLF/EiJ f 0.305 0.0392   9 0.0131 0.129 0.247, 0.35 -1.54
MOLF/EiJ m 0.291 0.028   10 0.00885 0.0962 0.229, 0.327 -1.66
MSM/MsJ f 0.295 0.0135   10 0.00428 0.0459 0.273, 0.311 -1.64
MSM/MsJ m 0.278 0.0244   10 0.00773 0.088 0.235, 0.322 -1.81
NOD/ShiLtJ f 0.525 0.0637   8 0.0225 0.121 0.452, 0.638 0.72
NOD/ShiLtJ m 0.509 0.0162   10 0.00513 0.0318 0.484, 0.533 0.87
NON/ShiLtJ f 0.542 0.047   10 0.0149 0.0867 0.483, 0.649 0.89
NON/ShiLtJ m 0.409 0.028   10 0.00884 0.0683 0.37, 0.453 -0.29
NZB/BlNJ f 0.555 0.0569   10 0.018 0.102 0.459, 0.65 1.02
NZB/BlNJ m 0.531 0.0389   10 0.0123 0.0733 0.451, 0.581 1.12
NZW/LacJ f 0.51 0.0373   10 0.0118 0.073 0.458, 0.593 0.56
NZW/LacJ m 0.5 0.0379   10 0.012 0.0758 0.436, 0.56 0.76
PERA/EiJ f 0.294 0.0376   10 0.0119 0.128 0.24, 0.359 -1.65
PERA/EiJ m 0.418 0.11   10 0.0347 0.262 0.318, 0.718 -0.19
PL/J f 0.387 0.0332   10 0.0105 0.0858 0.341, 0.453 -0.7
PL/J m 0.386 0.108   10 0.0342 0.28 0.309, 0.682 -0.56
PWK/PhJ f 0.319 0.0423   10 0.0134 0.133 0.25, 0.384 -1.4
PWK/PhJ m 0.315 0.0308   10 0.00974 0.0979 0.27, 0.37 -1.38
RIIIS/J f 0.445 0.0762   10 0.0241 0.171 0.318, 0.579 -0.1
RIIIS/J m 0.428 0.0719   10 0.0227 0.168 0.313, 0.527 -0.07
SEA/GnJ f 0.487 0.0313   10 0.0099 0.0643 0.45, 0.549 0.33
SEA/GnJ m 0.41 0.0274   10 0.00867 0.0668 0.367, 0.459 -0.28
SJL/J f 0.488 0.0491   10 0.0155 0.101 0.414, 0.568 0.34
SJL/J m 0.564 0.186   10 0.059 0.33 0.428, 1.07 1.51
SM/J f 0.343 0.0323   10 0.0102 0.0941 0.271, 0.395 -1.15
SM/J m 0.415 0.127   10 0.0401 0.306 0.329, 0.769 -0.22
SPRET/EiJ f 0.352 0.0447   9 0.0149 0.127 0.277, 0.419 -1.06
SPRET/EiJ m 0.32 0.0165   5 0.0074 0.0517 0.3, 0.337 -1.32
SWR/J f 0.461 0.0604   10 0.0191 0.131 0.414, 0.621 0.06
SWR/J m 0.507 0.0304   9 0.0101 0.0599 0.48, 0.577 0.85
WSB/EiJ f 0.356 0.0323   10 0.0102 0.0907 0.333, 0.421 -1.02
WSB/EiJ m 0.359 0.0485   10 0.0153 0.135 0.274, 0.437 -0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.5446 0.0192 0.5824 0.5068
129S1/SvImJ m 0.5016 0.0203 0.5414 0.4617
A/J f 0.3819 0.0192 0.4197 0.3441
A/J m 0.4115 0.0192 0.4493 0.3737
AKR/J f 0.5969 0.0203 0.6367 0.5571
AKR/J m 0.5531 0.0192 0.5909 0.5153
BALB/cByJ f 0.509 0.0203 0.5488 0.4692
BALB/cByJ m 0.4688 0.0192 0.5066 0.431
BTBR T+ Itpr3tf/J f 0.622 0.0192 0.6598 0.5842
BTBR T+ Itpr3tf/J m 0.5867 0.0192 0.6245 0.5489
BUB/BnJ f 0.528 0.0192 0.5658 0.4902
BUB/BnJ m 0.5104 0.0203 0.5503 0.4706
C3H/HeJ f 0.5473 0.0192 0.5851 0.5095
C3H/HeJ m 0.5442 0.0192 0.582 0.5064
C57BL/10J f 0.4297 0.0192 0.4675 0.3919
C57BL/10J m 0.4078 0.0192 0.4456 0.37
C57BL/6J f 0.5076 0.0203 0.5474 0.4677
C57BL/6J m 0.4553 0.0203 0.4952 0.4155
C57BLKS/J f 0.378 0.0192 0.4158 0.3402
C57BLKS/J m 0.3796 0.0215 0.4219 0.3374
C57BR/cdJ f 0.6096 0.0157 0.6404 0.5788
C57BR/cdJ m 0.482 0.0169 0.5151 0.4489
C57L/J f 0.5711 0.0192 0.6089 0.5333
C57L/J m 0.483 0.0192 0.5208 0.4452
C58/J f 0.4848 0.0203 0.5246 0.445
C58/J m 0.5217 0.0203 0.5615 0.4818
CAST/EiJ f 0.3418 0.0192 0.3796 0.304
CAST/EiJ m 0.3468 0.0192 0.3846 0.309
CBA/J f 0.5256 0.0192 0.5634 0.4878
CBA/J m 0.4712 0.0192 0.509 0.4334
CE/J f 0.4677 0.0203 0.5075 0.4278
CE/J m 0.3819 0.0215 0.4241 0.3396
CZECHII/EiJ f 0.3001 0.0203 0.3399 0.2603
CZECHII/EiJ m 0.3283 0.0192 0.3661 0.2905
DBA/2J f 0.4318 0.0192 0.4696 0.394
DBA/2J m 0.4389 0.0192 0.4767 0.4011
FVB/NJ f 0.5081 0.0192 0.5459 0.4703
FVB/NJ m 0.4923 0.0192 0.5301 0.4545
I/LnJ f 0.4366 0.0192 0.4744 0.3988
I/LnJ m 0.4354 0.0192 0.4732 0.3976
JF1/MsJ f 0.3205 0.0192 0.3583 0.2827
JF1/MsJ m 0.2083 0.0192 0.2461 0.1705
KK/HlJ f 0.5206 0.0192 0.5584 0.4828
KK/HlJ m 0.4564 0.0192 0.4942 0.4186
LP/J f 0.5799 0.0192 0.6177 0.5421
LP/J m 0.503 0.0192 0.5408 0.4652
MA/MyJ f 0.3976 0.0215 0.4399 0.3554
MA/MyJ m 0.3551 0.0157 0.3859 0.3242
MOLF/EiJ f 0.3047 0.0203 0.3445 0.2648
MOLF/EiJ m 0.2909 0.0192 0.3287 0.2531
MSM/MsJ f 0.2949 0.0192 0.3327 0.2571
MSM/MsJ m 0.2777 0.0192 0.3155 0.2399
NOD/ShiLtJ f 0.5248 0.0215 0.567 0.4825
NOD/ShiLtJ m 0.5094 0.0192 0.5472 0.4716
NON/ShiLtJ f 0.5419 0.0192 0.5797 0.5041
NON/ShiLtJ m 0.4093 0.0192 0.4471 0.3715
NZB/BlNJ f 0.555 0.0192 0.5928 0.5172
NZB/BlNJ m 0.5311 0.0192 0.5689 0.4933
NZW/LacJ f 0.5104 0.0192 0.5482 0.4726
NZW/LacJ m 0.5005 0.0192 0.5383 0.4627
PERA/EiJ f 0.2941 0.0192 0.3319 0.2563
PERA/EiJ m 0.4179 0.0192 0.4557 0.3801
PL/J f 0.387 0.0192 0.4248 0.3492
PL/J m 0.3858 0.0192 0.4236 0.348
PWK/PhJ f 0.3191 0.0192 0.3569 0.2813
PWK/PhJ m 0.3146 0.0192 0.3524 0.2768
RIIIS/J f 0.4451 0.0192 0.4829 0.4073
RIIIS/J m 0.4285 0.0192 0.4663 0.3907
SEA/GnJ f 0.4871 0.0192 0.5249 0.4493
SEA/GnJ m 0.4103 0.0192 0.4481 0.3725
SJL/J f 0.4876 0.0192 0.5254 0.4498
SJL/J m 0.5643 0.0192 0.6021 0.5265
SM/J f 0.3434 0.0192 0.3812 0.3056
SM/J m 0.4147 0.0192 0.4525 0.3769
SPRET/EiJ f 0.3521 0.0203 0.3919 0.3123
SPRET/EiJ m 0.3202 0.0272 0.3736 0.2668
SWR/J f 0.4609 0.0192 0.4987 0.4231
SWR/J m 0.5072 0.0203 0.547 0.4674
WSB/EiJ f 0.3563 0.0192 0.3941 0.3185
WSB/EiJ m 0.3587 0.0192 0.3965 0.3209


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.5231 0.014 0.5505 0.4956
A/J both 0.3967 0.0136 0.4234 0.37
AKR/J both 0.575 0.014 0.6024 0.5475
BALB/cByJ both 0.4889 0.014 0.5163 0.4615
BTBR T+ Itpr3tf/J both 0.6044 0.0136 0.6311 0.5776
BUB/BnJ both 0.5192 0.014 0.5467 0.4918
C3H/HeJ both 0.5458 0.0136 0.5725 0.519
C57BL/10J both 0.4187 0.0136 0.4455 0.392
C57BL/6J both 0.4814 0.0143 0.5096 0.4533
C57BLKS/J both 0.3788 0.0144 0.4071 0.3505
C57BR/cdJ both 0.5458 0.0115 0.5684 0.5232
C57L/J both 0.5271 0.0136 0.5538 0.5003
C58/J both 0.5032 0.0143 0.5314 0.4751
CAST/EiJ both 0.3443 0.0136 0.371 0.3176
CBA/J both 0.4984 0.0136 0.5251 0.4717
CE/J both 0.4248 0.0148 0.4538 0.3957
CZECHII/EiJ both 0.3142 0.014 0.3417 0.2868
DBA/2J both 0.4354 0.0136 0.4621 0.4086
FVB/NJ both 0.5002 0.0136 0.5269 0.4735
I/LnJ both 0.436 0.0136 0.4627 0.4093
JF1/MsJ both 0.2644 0.0136 0.2911 0.2377
KK/HlJ both 0.4885 0.0136 0.5152 0.4618
LP/J both 0.5415 0.0136 0.5682 0.5147
MA/MyJ both 0.3763 0.0133 0.4025 0.3502
MOLF/EiJ both 0.2978 0.014 0.3252 0.2703
MSM/MsJ both 0.2863 0.0136 0.313 0.2596
NOD/ShiLtJ both 0.5171 0.0144 0.5454 0.4887
NON/ShiLtJ both 0.4756 0.0136 0.5023 0.4489
NZB/BlNJ both 0.543 0.0136 0.5698 0.5163
NZW/LacJ both 0.5055 0.0136 0.5322 0.4787
PERA/EiJ both 0.356 0.0136 0.3827 0.3293
PL/J both 0.3864 0.0136 0.4131 0.3597
PWK/PhJ both 0.3169 0.0136 0.3436 0.2901
RIIIS/J both 0.4368 0.0136 0.4635 0.4101
SEA/GnJ both 0.4487 0.0136 0.4754 0.422
SJL/J both 0.526 0.0136 0.5527 0.4992
SM/J both 0.3791 0.0136 0.4058 0.3523
SPRET/EiJ both 0.3362 0.017 0.3695 0.3028
SWR/J both 0.4841 0.014 0.5115 0.4566
WSB/EiJ both 0.3575 0.0136 0.3842 0.3308




  GWAS USING LINEAR MIXED MODELS