Project measure / variable:   Tordoff3   pH

ID, description, units MPD:10322   pH   blood pH   [pH]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 13-15wks
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  STRAIN COMPARISON PLOT
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Tordoff3 - blood pH



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means7.21   pH 7.19   pH
Median of the strain means7.21   pH 7.19   pH
SD of the strain means± 0.0461 ± 0.0495
Coefficient of variation (CV)0.00640 0.00689
Min–max range of strain means7.07   –   7.29   pH 7.05   –   7.33   pH
Mean sample size per strain9.8   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0342 0.0342 10.7235 0.0011
strain 39 1.5643 0.0401 12.583 < 0.0001
sex:strain 39 0.164 0.0042 1.3191 0.0953
Residuals 708 2.2569 0.0032


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.25 0.0351   10 0.0111 0.00484 7.19, 7.3 0.96
129S1/SvImJ m 7.27 0.0148   9 0.00494 0.00204 7.24, 7.29 1.55
A/J f 7.23 0.0901   10 0.0285 0.0125 7.07, 7.39 0.53
A/J m 7.15 0.0448   10 0.0142 0.00627 7.08, 7.22 -0.87
AKR/J f 7.28 0.0252   9 0.00841 0.00346 7.23, 7.31 1.61
AKR/J m 7.24 0.0566   10 0.0179 0.00782 7.1, 7.29 0.94
BALB/cByJ f 7.23 0.0415   9 0.0138 0.00573 7.16, 7.28 0.53
BALB/cByJ m 7.16 0.0479   10 0.0151 0.00668 7.1, 7.24 -0.67
BTBR T+ Itpr3tf/J f 7.23 0.0227   10 0.00718 0.00314 7.2, 7.27 0.53
BTBR T+ Itpr3tf/J m 7.22 0.0333   10 0.0105 0.00462 7.18, 7.27 0.54
BUB/BnJ f 7.24 0.0579   10 0.0183 0.008 7.14, 7.32 0.74
BUB/BnJ m 7.24 0.0321   9 0.0107 0.00443 7.18, 7.28 0.94
C3H/HeJ f 7.2 0.0301   10 0.00952 0.00418 7.16, 7.27 -0.12
C3H/HeJ m 7.16 0.0562   10 0.0178 0.00785 7.05, 7.23 -0.67
C57BL/10J f 7.21 0.0603   10 0.0191 0.00837 7.14, 7.33 0.09
C57BL/10J m 7.19 0.0683   10 0.0216 0.00949 7.1, 7.34 -0.07
C57BL/6J f 7.2 0.066   9 0.022 0.00917 7.1, 7.31 -0.12
C57BL/6J m 7.19 0.0693   9 0.0231 0.00963 7.09, 7.28 -0.07
C57BLKS/J f 7.23 0.0528   10 0.0167 0.0073 7.14, 7.3 0.53
C57BLKS/J m 7.24 0.028   8 0.0099 0.00387 7.2, 7.29 0.94
C57BR/cdJ f 7.18 0.0564   15 0.0146 0.00785 7.08, 7.26 -0.56
C57BR/cdJ m 7.19 0.0621   13 0.0172 0.00864 7.09, 7.28 -0.07
C57L/J f 7.19 0.0671   10 0.0212 0.00933 7.06, 7.3 -0.34
C57L/J m 7.19 0.0688   10 0.0218 0.00957 7.05, 7.29 -0.07
C58/J f 7.19 0.06   9 0.02 0.00834 7.1, 7.26 -0.34
C58/J m 7.21 0.0492   9 0.0164 0.00682 7.09, 7.26 0.34
CAST/EiJ f 7.19 0.0899   10 0.0284 0.0125 6.96, 7.28 -0.34
CAST/EiJ m 7.19 0.0606   10 0.0192 0.00843 7.09, 7.27 -0.07
CBA/J f 7.11 0.117   10 0.0369 0.0164 6.81, 7.25 -2.08
CBA/J m 7.14 0.0725   10 0.0229 0.0102 6.98, 7.22 -1.08
CE/J f 7.21 0.0509   9 0.017 0.00707 7.14, 7.31 0.09
CE/J m 7.21 0.0329   8 0.0116 0.00456 7.15, 7.25 0.34
CZECHII/EiJ f 7.07 0.0718   9 0.0239 0.0102 6.96, 7.18 -2.94
CZECHII/EiJ m 7.05 0.097   10 0.0307 0.0138 6.9, 7.21 -2.89
DBA/2J f 7.25 0.0603   10 0.0191 0.00832 7.13, 7.34 0.96
DBA/2J m 7.19 0.062   10 0.0196 0.00863 7.05, 7.27 -0.07
FVB/NJ f 7.21 0.0572   10 0.0181 0.00793 7.13, 7.28 0.09
FVB/NJ m 7.21 0.0362   10 0.0115 0.00502 7.15, 7.27 0.34
I/LnJ f 7.27 0.0317   10 0.01 0.00436 7.21, 7.3 1.39
I/LnJ m 7.23 0.0262   10 0.0083 0.00363 7.18, 7.26 0.74
JF1/MsJ f 7.29 0.0443   10 0.014 0.00607 7.19, 7.36 1.83
JF1/MsJ m 7.33 0.0579   10 0.0183 0.0079 7.26, 7.43 2.76
KK/HlJ f 7.22 0.0306   10 0.00967 0.00424 7.19, 7.27 0.31
KK/HlJ m 7.19 0.0256   10 0.00809 0.00356 7.16, 7.24 -0.07
LP/J f 7.27 0.0437   10 0.0138 0.00601 7.2, 7.34 1.39
LP/J m 7.23 0.0385   10 0.0122 0.00533 7.17, 7.29 0.74
MA/MyJ f 7.2 0.0376   8 0.0133 0.00522 7.13, 7.25 -0.12
MA/MyJ m 7.22 0.0356   15 0.0092 0.00494 7.17, 7.3 0.54
MOLF/EiJ f 7.16 0.0704   9 0.0235 0.00984 7.03, 7.25 -0.99
MOLF/EiJ m 7.17 0.061   10 0.0193 0.00851 7.07, 7.24 -0.47
MSM/MsJ f 7.15 0.0367   10 0.0116 0.00513 7.09, 7.19 -1.21
MSM/MsJ m 7.09 0.0531   10 0.0168 0.0075 7.01, 7.17 -2.08
NOD/ShiLtJ f 7.25 0.0444   9 0.0148 0.00612 7.16, 7.31 0.96
NOD/ShiLtJ m 7.2 0.0563   10 0.0178 0.00783 7.11, 7.26 0.14
NON/ShiLtJ f 7.18 0.0377   10 0.0119 0.00525 7.11, 7.25 -0.56
NON/ShiLtJ m 7.16 0.0418   10 0.0132 0.00584 7.11, 7.22 -0.67
NZB/BlNJ f 7.2 0.0786   10 0.0249 0.0109 7.02, 7.28 -0.12
NZB/BlNJ m 7.22 0.0538   10 0.017 0.00746 7.09, 7.28 0.54
NZW/LacJ f 7.19 0.0403   10 0.0127 0.0056 7.13, 7.26 -0.34
NZW/LacJ m 7.19 0.0429   10 0.0136 0.00597 7.12, 7.28 -0.07
PERA/EiJ f 7.17 0.0651   10 0.0206 0.00907 7.07, 7.26 -0.78
PERA/EiJ m 7.14 0.0513   10 0.0162 0.00718 7.05, 7.21 -1.08
PL/J f 7.27 0.0635   10 0.0201 0.00873 7.16, 7.38 1.39
PL/J m 7.23 0.065   10 0.0206 0.009 7.09, 7.28 0.74
PWK/PhJ f 7.15 0.05   10 0.0158 0.00699 7.04, 7.24 -1.21
PWK/PhJ m 7.16 0.0401   10 0.0127 0.0056 7.09, 7.23 -0.67
RIIIS/J f 7.19 0.0667   10 0.0211 0.00928 7.05, 7.27 -0.34
RIIIS/J m 7.14 0.106   10 0.0335 0.0149 6.86, 7.25 -1.08
SEA/GnJ f 7.17 0.042   10 0.0133 0.00586 7.11, 7.23 -0.78
SEA/GnJ m 7.15 0.0585   10 0.0185 0.00817 7.07, 7.23 -0.87
SJL/J f 7.21 0.0745   10 0.0235 0.0103 7.05, 7.31 0.09
SJL/J m 7.22 0.0602   10 0.019 0.00835 7.11, 7.29 0.54
SM/J f 7.25 0.0525   10 0.0166 0.00724 7.17, 7.31 0.96
SM/J m 7.27 0.0412   10 0.013 0.00566 7.2, 7.31 1.55
SPRET/EiJ f 7.14 0.0544   9 0.0181 0.00762 7.02, 7.2 -1.43
SPRET/EiJ m 7.16 0.0729   5 0.0326 0.0102 7.07, 7.24 -0.67
SWR/J f 7.22 0.0455   10 0.0144 0.00631 7.14, 7.31 0.31
SWR/J m 7.22 0.0652   9 0.0217 0.00903 7.11, 7.33 0.54
WSB/EiJ f 7.18 0.0408   10 0.0129 0.00568 7.12, 7.24 -0.56
WSB/EiJ m 7.17 0.0555   10 0.0176 0.00775 7.09, 7.24 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.251 0.0179 7.2861 7.2159
129S1/SvImJ m 7.2678 0.0188 7.3047 7.2308
A/J f 7.231 0.0179 7.2661 7.1959
A/J m 7.149 0.0179 7.1841 7.1139
AKR/J f 7.2789 0.0188 7.3158 7.2419
AKR/J m 7.236 0.0179 7.2711 7.2009
BALB/cByJ f 7.2322 0.0188 7.2692 7.1953
BALB/cByJ m 7.163 0.0179 7.1981 7.1279
BTBR T+ Itpr3tf/J f 7.234 0.0179 7.2691 7.1989
BTBR T+ Itpr3tf/J m 7.223 0.0179 7.2581 7.1879
BUB/BnJ f 7.243 0.0179 7.2781 7.2079
BUB/BnJ m 7.2356 0.0188 7.2725 7.1986
C3H/HeJ f 7.202 0.0179 7.2371 7.1669
C3H/HeJ m 7.16 0.0179 7.1951 7.1249
C57BL/10J f 7.208 0.0179 7.2431 7.1729
C57BL/10J m 7.192 0.0179 7.2271 7.1569
C57BL/6J f 7.1989 0.0188 7.2358 7.1619
C57BL/6J m 7.1933 0.0188 7.2303 7.1564
C57BLKS/J f 7.229 0.0179 7.2641 7.1939
C57BLKS/J m 7.2412 0.02 7.2804 7.2021
C57BR/cdJ f 7.1847 0.0146 7.2133 7.156
C57BR/cdJ m 7.1862 0.0157 7.2169 7.1554
C57L/J f 7.192 0.0179 7.2271 7.1569
C57L/J m 7.193 0.0179 7.2281 7.1579
C58/J f 7.19 0.0188 7.2269 7.1531
C58/J m 7.2122 0.0188 7.2492 7.1753
CAST/EiJ f 7.188 0.0179 7.2231 7.1529
CAST/EiJ m 7.189 0.0179 7.2241 7.1539
CBA/J f 7.115 0.0179 7.1501 7.0799
CBA/J m 7.142 0.0179 7.1771 7.1069
CE/J f 7.2078 0.0188 7.2447 7.1708
CE/J m 7.2137 0.02 7.2529 7.1746
CZECHII/EiJ f 7.0667 0.0188 7.1036 7.0297
CZECHII/EiJ m 7.052 0.0179 7.0871 7.0169
DBA/2J f 7.252 0.0179 7.2871 7.2169
DBA/2J m 7.187 0.0179 7.2221 7.1519
FVB/NJ f 7.21 0.0179 7.2451 7.1749
FVB/NJ m 7.21 0.0179 7.2451 7.1749
I/LnJ f 7.266 0.0179 7.3011 7.2309
I/LnJ m 7.23 0.0179 7.2651 7.1949
JF1/MsJ f 7.295 0.0179 7.3301 7.2599
JF1/MsJ m 7.33 0.0179 7.3651 7.2949
KK/HlJ f 7.217 0.0179 7.2521 7.1819
KK/HlJ m 7.189 0.0179 7.2241 7.1539
LP/J f 7.268 0.0179 7.3031 7.2329
LP/J m 7.232 0.0179 7.2671 7.1969
MA/MyJ f 7.1987 0.02 7.2379 7.1596
MA/MyJ m 7.2187 0.0146 7.2473 7.19
MOLF/EiJ f 7.1556 0.0188 7.1925 7.1186
MOLF/EiJ m 7.171 0.0179 7.2061 7.1359
MSM/MsJ f 7.149 0.0179 7.1841 7.1139
MSM/MsJ m 7.087 0.0179 7.1221 7.0519
NOD/ShiLtJ f 7.2478 0.0188 7.2847 7.2108
NOD/ShiLtJ m 7.198 0.0179 7.2331 7.1629
NON/ShiLtJ f 7.183 0.0179 7.2181 7.1479
NON/ShiLtJ m 7.162 0.0179 7.1971 7.1269
NZB/BlNJ f 7.197 0.0179 7.2321 7.1619
NZB/BlNJ m 7.215 0.0179 7.2501 7.1799
NZW/LacJ f 7.193 0.0179 7.2281 7.1579
NZW/LacJ m 7.188 0.0179 7.2231 7.1529
PERA/EiJ f 7.171 0.0179 7.2061 7.1359
PERA/EiJ m 7.141 0.0179 7.1761 7.1059
PL/J f 7.271 0.0179 7.3061 7.2359
PL/J m 7.225 0.0179 7.2601 7.1899
PWK/PhJ f 7.151 0.0179 7.1861 7.1159
PWK/PhJ m 7.156 0.0179 7.1911 7.1209
RIIIS/J f 7.187 0.0179 7.2221 7.1519
RIIIS/J m 7.139 0.0179 7.1741 7.1039
SEA/GnJ f 7.165 0.0179 7.2001 7.1299
SEA/GnJ m 7.152 0.0179 7.1871 7.1169
SJL/J f 7.211 0.0179 7.2461 7.1759
SJL/J m 7.215 0.0179 7.2501 7.1799
SM/J f 7.253 0.0179 7.2881 7.2179
SM/J m 7.266 0.0179 7.3011 7.2309
SPRET/EiJ f 7.1411 0.0188 7.1781 7.1042
SPRET/EiJ m 7.162 0.0252 7.2116 7.1124
SWR/J f 7.216 0.0179 7.2511 7.1809
SWR/J m 7.2233 0.0188 7.2603 7.1864
WSB/EiJ f 7.182 0.0179 7.2171 7.1469
WSB/EiJ m 7.168 0.0179 7.2031 7.1329


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.2594 0.013 7.2849 7.2339
A/J both 7.19 0.0126 7.2148 7.1652
AKR/J both 7.2574 0.013 7.2829 7.232
BALB/cByJ both 7.1976 0.013 7.2231 7.1721
BTBR T+ Itpr3tf/J both 7.2285 0.0126 7.2533 7.2037
BUB/BnJ both 7.2393 0.013 7.2647 7.2138
C3H/HeJ both 7.181 0.0126 7.2058 7.1562
C57BL/10J both 7.2 0.0126 7.2248 7.1752
C57BL/6J both 7.1961 0.0133 7.2222 7.17
C57BLKS/J both 7.2351 0.0134 7.2614 7.2088
C57BR/cdJ both 7.1854 0.0107 7.2064 7.1644
C57L/J both 7.1925 0.0126 7.2173 7.1677
C58/J both 7.2011 0.0133 7.2272 7.175
CAST/EiJ both 7.1885 0.0126 7.2133 7.1637
CBA/J both 7.1285 0.0126 7.1533 7.1037
CE/J both 7.2108 0.0137 7.2377 7.1838
CZECHII/EiJ both 7.0593 0.013 7.0848 7.0339
DBA/2J both 7.2195 0.0126 7.2443 7.1947
FVB/NJ both 7.21 0.0126 7.2348 7.1852
I/LnJ both 7.248 0.0126 7.2728 7.2232
JF1/MsJ both 7.3125 0.0126 7.3373 7.2877
KK/HlJ both 7.203 0.0126 7.2278 7.1782
LP/J both 7.25 0.0126 7.2748 7.2252
MA/MyJ both 7.2087 0.0124 7.233 7.1844
MOLF/EiJ both 7.1633 0.013 7.1887 7.1378
MSM/MsJ both 7.118 0.0126 7.1428 7.0932
NOD/ShiLtJ both 7.2229 0.013 7.2484 7.1974
NON/ShiLtJ both 7.1725 0.0126 7.1973 7.1477
NZB/BlNJ both 7.206 0.0126 7.2308 7.1812
NZW/LacJ both 7.1905 0.0126 7.2153 7.1657
PERA/EiJ both 7.156 0.0126 7.1808 7.1312
PL/J both 7.248 0.0126 7.2728 7.2232
PWK/PhJ both 7.1535 0.0126 7.1783 7.1287
RIIIS/J both 7.163 0.0126 7.1878 7.1382
SEA/GnJ both 7.1585 0.0126 7.1833 7.1337
SJL/J both 7.213 0.0126 7.2378 7.1882
SM/J both 7.2595 0.0126 7.2843 7.2347
SPRET/EiJ both 7.1516 0.0157 7.1825 7.1206
SWR/J both 7.2197 0.013 7.2451 7.1942
WSB/EiJ both 7.175 0.0126 7.1998 7.1502




  GWAS USING LINEAR MIXED MODELS