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Project measure / variable:   Tordoff3   NaCl_pref25

ID, description, units MPD:10314   NaCl_pref25   preference for NaCl (sodium chloride) solutions   [%]  concentration 25 mM  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 11-13wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff3 - preference for NaCl (sodium chloride) solutions concentration 25 mM



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means59.6   % 57.7   %
Median of the strain means60.2   % 57.6   %
SD of the strain means± 11.3 ± 11.8
Coefficient of variation (CV)0.190 0.204
Min–max range of strain means39.6   –   93.2   % 33.6   –   81.8   %
Mean sample size per strain9.8   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 663.5154 663.5154 2.4101 0.121
strain 39 87067.9721 2232.5121 8.1091 < 0.0001
sex:strain 39 17197.0256 440.9494 1.6017 0.0125
Residuals 710 195469.4664 275.3091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 68.5 18.5   10 5.84 0.27 28.9, 91.1 0.78
129S1/SvImJ m 67.2 17.8   9 5.93 0.265 31.1, 92.9 0.81
A/J f 56.2 16.2   10 5.13 0.289 20.8, 75.7 -0.3
A/J m 50.7 16.0   10 5.05 0.315 18.3, 72.2 -0.59
AKR/J f 39.6 24.5   9 8.18 0.62 6.2, 74.2 -1.77
AKR/J m 39.5 18.1   10 5.72 0.457 12.2, 62.2 -1.54
BALB/cByJ f 69.2 17.0   9 5.66 0.245 39.3, 92.6 0.85
BALB/cByJ m 68.6 21.2   10 6.7 0.309 36.5, 92.5 0.93
BTBR T+ Itpr3tf/J f 68.3 14.9   10 4.72 0.219 40.9, 86.9 0.77
BTBR T+ Itpr3tf/J m 66.4 15.9   10 5.03 0.239 39.8, 93.0 0.74
BUB/BnJ f 61.6 12.6   10 3.97 0.204 37.5, 81.3 0.17
BUB/BnJ m 62.9 14.9   9 4.97 0.237 30.6, 81.0 0.44
C3H/HeJ f 60.0 16.0   10 5.06 0.267 34.2, 93.2 0.03
C3H/HeJ m 58.3 24.8   10 7.85 0.426 18.0, 90.9 0.05
C57BL/10J f 64.6 5.15   10 1.63 0.0797 53.6, 69.4 0.44
C57BL/10J m 63.0 13.0   10 4.12 0.207 29.2, 76.7 0.45
C57BL/6J f 57.1 9.07   9 3.02 0.159 44.8, 71.4 -0.22
C57BL/6J m 65.0 8.4   9 2.8 0.129 52.1, 80.0 0.62
C57BLKS/J f 60.5 6.53   10 2.07 0.108 46.7, 69.9 0.08
C57BLKS/J m 65.9 9.0   8 3.18 0.137 48.7, 77.1 0.7
C57BR/cdJ f 47.3 12.0   15 3.11 0.255 20.5, 66.1 -1.09
C57BR/cdJ m 39.9 9.46   13 2.62 0.237 25.7, 53.8 -1.51
C57L/J f 48.8 7.75   10 2.45 0.159 32.3, 58.3 -0.96
C57L/J m 49.0 7.4   10 2.34 0.151 35.7, 60.9 -0.73
C58/J f 46.0 32.5   9 10.8 0.707 3.7, 93.3 -1.2
C58/J m 73.8 23.1   9 7.7 0.313 19.8, 95.5 1.37
CAST/EiJ f 67.9 6.97   11 2.1 0.103 52.8, 80.6 0.73
CAST/EiJ m 68.8 3.97   10 1.25 0.0577 62.0, 75.4 0.95
CBA/J f 47.1 20.9   10 6.62 0.444 19.0, 76.7 -1.11
CBA/J m 50.2 27.3   10 8.63 0.544 11.4, 88.1 -0.63
CE/J f 48.7 19.6   9 6.52 0.402 16.5, 72.9 -0.96
CE/J m 71.7 12.2   8 4.3 0.17 52.1, 88.3 1.19
CZECHII/EiJ f 43.9 35.1   9 11.7 0.799 5.7, 89.6 -1.39
CZECHII/EiJ m 47.0 24.6   10 7.77 0.522 10.5, 90.6 -0.9
DBA/2J f 49.6 23.2   10 7.32 0.467 14.9, 92.1 -0.88
DBA/2J m 50.9 18.1   10 5.74 0.357 28.6, 72.7 -0.57
FVB/NJ f 64.0 20.9   10 6.61 0.327 8.3, 82.4 0.39
FVB/NJ m 67.6 11.3   10 3.58 0.168 39.5, 80.0 0.84
I/LnJ f 56.4 8.56   10 2.71 0.152 46.2, 72.1 -0.28
I/LnJ m 46.3 16.2   10 5.12 0.35 13.3, 73.2 -0.96
JF1/MsJ f 71.4 12.0   10 3.81 0.169 44.9, 85.7 1.04
JF1/MsJ m 75.4 8.67   10 2.74 0.115 57.8, 87.2 1.5
KK/HlJ f 77.5 9.69   10 3.06 0.125 65.4, 93.5 1.58
KK/HlJ m 61.7 17.7   10 5.61 0.287 35.5, 88.7 0.34
LP/J f 72.4 13.2   10 4.19 0.183 47.1, 89.9 1.13
LP/J m 50.2 20.6   10 6.51 0.41 12.2, 81.3 -0.63
MA/MyJ f 93.2 6.01   8 2.13 0.0645 83.3, 98.9 2.96
MA/MyJ m 81.8 9.33   15 2.41 0.114 62.2, 94.5 2.05
MOLF/EiJ f 63.4 14.6   9 4.88 0.231 43.8, 84.7 0.33
MOLF/EiJ m 46.7 16.0   10 5.05 0.342 12.1, 63.6 -0.93
MSM/MsJ f 70.2 14.5   10 4.57 0.206 44.6, 87.7 0.93
MSM/MsJ m 64.6 16.0   10 5.06 0.248 30.6, 85.7 0.59
NOD/ShiLtJ f 61.9 12.4   10 3.93 0.201 34.1, 77.7 0.2
NOD/ShiLtJ m 43.2 17.4   10 5.51 0.403 13.1, 71.7 -1.23
NON/ShiLtJ f 55.3 11.4   10 3.62 0.207 37.8, 73.7 -0.38
NON/ShiLtJ m 51.4 17.3   10 5.46 0.336 21.9, 73.7 -0.53
NZB/BlNJ f 56.3 5.71   10 1.8 0.101 48.0, 69.0 -0.29
NZB/BlNJ m 59.8 4.82   10 1.52 0.0806 52.6, 67.0 0.18
NZW/LacJ f 76.3 8.91   10 2.82 0.117 57.1, 86.5 1.47
NZW/LacJ m 76.0 8.14   10 2.57 0.107 65.4, 89.3 1.56
PERA/EiJ f 51.5 19.1   10 6.03 0.37 33.3, 81.6 -0.72
PERA/EiJ m 41.4 21.3   10 6.73 0.513 12.5, 89.8 -1.38
PL/J f 42.7 22.3   10 7.05 0.522 8.0, 79.1 -1.49
PL/J m 46.9 21.7   10 6.85 0.462 20.9, 71.2 -0.91
PWK/PhJ f 58.9 17.5   10 5.53 0.297 30.2, 90.9 -0.06
PWK/PhJ m 55.3 28.9   10 9.13 0.522 4.9, 84.1 -0.2
RIIIS/J f 63.2 5.44   10 1.72 0.0861 55.1, 72.4 0.32
RIIIS/J m 59.0 14.8   10 4.69 0.252 27.0, 84.8 0.11
SEA/GnJ f 52.7 15.2   10 4.81 0.289 29.5, 76.9 -0.61
SEA/GnJ m 54.6 8.79   10 2.78 0.161 44.3, 67.3 -0.26
SJL/J f 65.1 18.2   10 5.76 0.279 16.8, 78.8 0.48
SJL/J m 57.0 22.9   10 7.23 0.401 14.2, 84.8 -0.06
SM/J f 55.3 15.8   10 5.01 0.286 25.8, 71.1 -0.38
SM/J m 43.9 18.6   10 5.88 0.423 14.2, 73.6 -1.17
SPRET/EiJ f 68.6 9.83   9 3.28 0.143 55.4, 84.3 0.79
SPRET/EiJ m 57.0 12.1   5 5.39 0.212 43.6, 69.8 -0.06
SWR/J f 63.8 15.3   10 4.84 0.24 28.6, 80.0 0.37
SWR/J m 74.1 10.0   9 3.34 0.135 53.1, 88.0 1.39
WSB/EiJ f 39.9 19.4   10 6.12 0.485 8.6, 70.4 -1.74
WSB/EiJ m 33.6 25.5   10 8.06 0.759 4.8, 73.8 -2.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 68.45 5.247 78.7515 58.1485
129S1/SvImJ m 67.1556 5.5308 78.0143 56.2968
A/J f 56.18 5.247 66.4815 45.8785
A/J m 50.74 5.247 61.0415 40.4385
AKR/J f 39.5667 5.5308 50.4254 28.708
AKR/J m 39.53 5.247 49.8315 29.2285
BALB/cByJ f 69.1556 5.5308 80.0143 58.2968
BALB/cByJ m 68.55 5.247 78.8515 58.2485
BTBR T+ Itpr3tf/J f 68.31 5.247 78.6115 58.0085
BTBR T+ Itpr3tf/J m 66.41 5.247 76.7115 56.1085
BUB/BnJ f 61.62 5.247 71.9215 51.3185
BUB/BnJ m 62.9222 5.5308 73.7809 52.0635
C3H/HeJ f 59.95 5.247 70.2515 49.6485
C3H/HeJ m 58.29 5.247 68.5915 47.9885
C57BL/10J f 64.61 5.247 74.9115 54.3085
C57BL/10J m 63.02 5.247 73.3215 52.7185
C57BL/6J f 57.0889 5.5308 67.9476 46.2302
C57BL/6J m 64.9889 5.5308 75.8476 54.1302
C57BLKS/J f 60.53 5.247 70.8315 50.2285
C57BLKS/J m 65.875 5.8663 77.3924 54.3576
C57BR/cdJ f 47.3 4.2841 55.7111 38.8889
C57BR/cdJ m 39.8692 4.6019 48.9042 30.8342
C57L/J f 48.82 5.247 59.1215 38.5185
C57L/J m 49.02 5.247 59.3215 38.7185
C58/J f 45.9889 5.5308 56.8476 35.1302
C58/J m 73.7778 5.5308 84.6365 62.9191
CAST/EiJ f 67.8909 5.0028 77.713 58.0688
CAST/EiJ m 68.77 5.247 79.0715 58.4685
CBA/J f 47.07 5.247 57.3715 36.7685
CBA/J m 50.17 5.247 60.4715 39.8685
CE/J f 48.7111 5.5308 59.5698 37.8524
CE/J m 71.6875 5.8663 83.2049 60.1701
CZECHII/EiJ f 43.9333 5.5308 54.792 33.0746
CZECHII/EiJ m 47.04 5.247 57.3415 36.7385
DBA/2J f 49.63 5.247 59.9315 39.3285
DBA/2J m 50.85 5.247 61.1515 40.5485
FVB/NJ f 63.96 5.247 74.2615 53.6585
FVB/NJ m 67.63 5.247 77.9315 57.3285
I/LnJ f 56.44 5.247 66.7415 46.1385
I/LnJ m 46.31 5.247 56.6115 36.0085
JF1/MsJ f 71.39 5.247 81.6915 61.0885
JF1/MsJ m 75.4 5.247 85.7015 65.0985
KK/HlJ f 77.54 5.247 87.8415 67.2385
KK/HlJ m 61.69 5.247 71.9915 51.3885
LP/J f 72.41 5.247 82.7115 62.1085
LP/J m 50.17 5.247 60.4715 39.8685
MA/MyJ f 93.2 5.8663 104.7174 81.6826
MA/MyJ m 81.7933 4.2841 90.2045 73.3822
MOLF/EiJ f 63.3556 5.5308 74.2143 52.4968
MOLF/EiJ m 46.7 5.247 57.0015 36.3985
MSM/MsJ f 70.16 5.247 80.4615 59.8585
MSM/MsJ m 64.59 5.247 74.8915 54.2885
NOD/ShiLtJ f 61.87 5.247 72.1715 51.5685
NOD/ShiLtJ m 43.21 5.247 53.5115 32.9085
NON/ShiLtJ f 55.31 5.247 65.6115 45.0085
NON/ShiLtJ m 51.38 5.247 61.6815 41.0785
NZB/BlNJ f 56.26 5.247 66.5615 45.9585
NZB/BlNJ m 59.77 5.247 70.0715 49.4685
NZW/LacJ f 76.26 5.247 86.5615 65.9585
NZW/LacJ m 75.97 5.247 86.2715 65.6685
PERA/EiJ f 51.49 5.247 61.7915 41.1885
PERA/EiJ m 41.42 5.247 51.7215 31.1185
PL/J f 42.72 5.247 53.0215 32.4185
PL/J m 46.89 5.247 57.1915 36.5885
PWK/PhJ f 58.92 5.247 69.2215 48.6185
PWK/PhJ m 55.35 5.247 65.6515 45.0485
RIIIS/J f 63.18 5.247 73.4815 52.8785
RIIIS/J m 58.96 5.247 69.2615 48.6585
SEA/GnJ f 52.69 5.247 62.9915 42.3885
SEA/GnJ m 54.6 5.247 64.9015 44.2985
SJL/J f 65.14 5.247 75.4415 54.8385
SJL/J m 57.02 5.247 67.3215 46.7185
SM/J f 55.33 5.247 65.6315 45.0285
SM/J m 43.94 5.247 54.2415 33.6385
SPRET/EiJ f 68.6 5.5308 79.4587 57.7413
SPRET/EiJ m 57.0 7.4204 71.5685 42.4315
SWR/J f 63.77 5.247 74.0715 53.4685
SWR/J m 74.1444 5.5308 85.0032 63.2857
WSB/EiJ f 39.87 5.247 50.1715 29.5685
WSB/EiJ m 33.58 5.247 43.8815 23.2785


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 67.8028 3.8119 75.2866 60.3189
A/J both 53.46 3.7102 60.7442 46.1758
AKR/J both 39.5483 3.8119 47.0322 32.0645
BALB/cByJ both 68.8528 3.8119 76.3366 61.3689
BTBR T+ Itpr3tf/J both 67.36 3.7102 74.6442 60.0758
BUB/BnJ both 62.2711 3.8119 69.755 54.7873
C3H/HeJ both 59.12 3.7102 66.4042 51.8358
C57BL/10J both 63.815 3.7102 71.0992 56.5308
C57BL/6J both 61.0389 3.9109 68.7172 53.3606
C57BLKS/J both 63.2025 3.9352 70.9286 55.4764
C57BR/cdJ both 43.5846 3.1437 49.7567 37.4125
C57L/J both 48.92 3.7102 56.2042 41.6358
C58/J both 59.8833 3.9109 67.5616 52.2051
CAST/EiJ both 68.3305 3.6249 75.4472 61.2137
CBA/J both 48.62 3.7102 55.9042 41.3358
CE/J both 60.1993 4.0312 68.1139 52.2847
CZECHII/EiJ both 45.4867 3.8119 52.9705 38.0028
DBA/2J both 50.24 3.7102 57.5242 42.9558
FVB/NJ both 65.795 3.7102 73.0792 58.5108
I/LnJ both 51.375 3.7102 58.6592 44.0908
JF1/MsJ both 73.395 3.7102 80.6792 66.1108
KK/HlJ both 69.615 3.7102 76.8992 62.3308
LP/J both 61.29 3.7102 68.5742 54.0058
MA/MyJ both 87.4967 3.6321 94.6275 80.3658
MOLF/EiJ both 55.0278 3.8119 62.5116 47.5439
MSM/MsJ both 67.375 3.7102 74.6592 60.0908
NOD/ShiLtJ both 52.54 3.7102 59.8242 45.2558
NON/ShiLtJ both 53.345 3.7102 60.6292 46.0608
NZB/BlNJ both 58.015 3.7102 65.2992 50.7308
NZW/LacJ both 76.115 3.7102 83.3992 68.8308
PERA/EiJ both 46.455 3.7102 53.7392 39.1708
PL/J both 44.805 3.7102 52.0892 37.5208
PWK/PhJ both 57.135 3.7102 64.4192 49.8508
RIIIS/J both 61.07 3.7102 68.3542 53.7858
SEA/GnJ both 53.645 3.7102 60.9292 46.3608
SJL/J both 61.08 3.7102 68.3642 53.7958
SM/J both 49.635 3.7102 56.9192 42.3508
SPRET/EiJ both 62.8 4.6274 71.885 53.715
SWR/J both 68.9572 3.8119 76.4411 61.4734
WSB/EiJ both 36.725 3.7102 44.0092 29.4408




  GWAS USING LINEAR MIXED MODELS