Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:7880120-7997889

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pim2 X 7878306 to 7883432 5126 + protein coding gene proviral integration site 2
Tssr160462 X 7882073 to 7882106 33 + TSS region transcription start site region 160462
Tssr160463 X 7882173 to 7882187 14 + TSS region transcription start site region 160463
Tssr160464 X 7882194 to 7882219 25 + TSS region transcription start site region 160464
Tssr160465 X 7882380 to 7882402 22 + TSS region transcription start site region 160465
Tssr160466 X 7884022 to 7884055 33 + TSS region transcription start site region 160466
Slc35a2 X 7884034 to 7894492 10458 + protein coding gene solute carrier family 35 (UDP-galactose transporter), member A2
Cpgi22583 X 7884056 to 7884627 571 CpG island CpG island 22583
Tssr160467 X 7884296 to 7884313 17 + TSS region transcription start site region 160467
Tssr160468 X 7884321 to 7884339 18 + TSS region transcription start site region 160468
DXImx14 X 7893703 to 7893877 174 DNA segment DNA segment, Chr X, Immunex 14
Pqbp1 X 7894519 to 7899269 4750 - protein coding gene polyglutamine binding protein 1
Tssr162818 X 7898638 to 7898654 16 - TSS region transcription start site region 162818
Tssr162819 X 7898864 to 7898912 48 - TSS region transcription start site region 162819
Tssr162820 X 7898950 to 7898983 33 - TSS region transcription start site region 162820
Cpgi22584 X 7899026 to 7899807 781 CpG island CpG island 22584
Tssr162821 X 7899196 to 7899206 10 - TSS region transcription start site region 162821
Tssr5585 X 7899198 to 7899200 2 + TSS region transcription start site region 5585
Tssr162822 X 7899220 to 7899271 51 - TSS region transcription start site region 162822
Tssr160469 X 7899334 to 7899341 7 + TSS region transcription start site region 160469
Timm17b X 7899336 to 7907652 8316 + protein coding gene translocase of inner mitochondrial membrane 17b
Tssr160470 X 7899350 to 7899362 12 + TSS region transcription start site region 160470
Tssr160471 X 7899388 to 7899432 44 + TSS region transcription start site region 160471
Gm10491 X 7907693 to 7907835 142 - protein coding gene predicted gene 10491
Gm10490 X 7909542 to 7909927 385 + protein coding gene predicted gene 10490
DXImx15 X 7913757 to 7913897 140 DNA segment DNA segment, Chr X, Immunex 15
Tssr160472 X 7919816 to 7919905 89 + TSS region transcription start site region 160472
Pcsk1n X 7919822 to 7924410 4588 + protein coding gene proprotein convertase subtilisin/kexin type 1 inhibitor
Cpgi22585 X 7919847 to 7920043 196 CpG island CpG island 22585
Tssr160473 X 7919910 to 7919920 10 + TSS region transcription start site region 160473
Tssr160474 X 7920007 to 7920020 13 + TSS region transcription start site region 160474
Cpgi22586 X 7922004 to 7922749 745 CpG island CpG island 22586
Tssr160475 X 7922049 to 7922067 18 + TSS region transcription start site region 160475
Tssr160476 X 7922077 to 7922106 29 + TSS region transcription start site region 160476
Tssr160477 X 7922237 to 7922259 22 + TSS region transcription start site region 160477
Tssr160478 X 7922294 to 7922319 25 + TSS region transcription start site region 160478
Tssr160479 X 7922320 to 7922351 31 + TSS region transcription start site region 160479
Tssr160480 X 7922368 to 7922409 41 + TSS region transcription start site region 160480
Tssr162823 X 7922391 to 7922402 11 - TSS region transcription start site region 162823
Tssr160481 X 7922414 to 7922428 14 + TSS region transcription start site region 160481
Cpgi22587 X 7922878 to 7923056 178 CpG island CpG island 22587
Tssr160482 X 7922942 to 7922975 33 + TSS region transcription start site region 160482
Tssr162824 X 7923167 to 7923191 24 - TSS region transcription start site region 162824
Tssr5586 X 7923168 to 7923195 27 + TSS region transcription start site region 5586
Eras X 7924276 to 7928607 4331 - protein coding gene ES cell-expressed Ras
Tssr162825 X 7928507 to 7928526 19 - TSS region transcription start site region 162825
Hdac6 X 7930120 to 7947889 17769 - protein coding gene histone deacetylase 6
DXImx16 X 7934813 to 7934997 184 DNA segment DNA segment, Chr X, Immunex 16
DXImx17 X 7935396 to 7935543 147 DNA segment DNA segment, Chr X, Immunex 17
Cpgi22588 X 7947591 to 7948424 833 CpG island CpG island 22588
Tssr162826 X 7947664 to 7947674 10 - TSS region transcription start site region 162826
Tssr162827 X 7947743 to 7947751 8 - TSS region transcription start site region 162827
Tssr162828 X 7947763 to 7947776 13 - TSS region transcription start site region 162828
Tssr162829 X 7947779 to 7947815 36 - TSS region transcription start site region 162829
Tssr162830 X 7947819 to 7947832 13 - TSS region transcription start site region 162830
Tssr162831 X 7947848 to 7947857 9 - TSS region transcription start site region 162831
Gm39488 X 7948101 to 8033483 85382 + lncRNA gene predicted gene, 39488
Psmb6-ps X 7950156 to 7950868 712 - pseudogene proteasome (prosome, macropain) subunit, beta type 6, pseudogene
Gata1 X 7959260 to 7976682 17422 - protein coding gene GATA binding protein 1
Tssr162832 X 7964166 to 7964191 25 - TSS region transcription start site region 162832
Tssr160483 X 7966340 to 7966366 26 + TSS region transcription start site region 160483
Tssr162833 X 7967802 to 7967812 10 - TSS region transcription start site region 162833
Tssr162834 X 7967817 to 7967875 58 - TSS region transcription start site region 162834
Tssr162835 X 7976544 to 7976562 18 - TSS region transcription start site region 162835
Tssr162836 X 7976588 to 7976607 19 - TSS region transcription start site region 162836
Tssr162837 X 7977968 to 7977975 7 - TSS region transcription start site region 162837
Tssr162838 X 7978027 to 7978040 13 - TSS region transcription start site region 162838