Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:139800161-140610335

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr162181 X 139800699 to 139800724 25 + TSS region transcription start site region 162181
Tssr162182 X 139800730 to 139800741 11 + TSS region transcription start site region 162182
Tssr162183 X 139800795 to 139800811 16 + TSS region transcription start site region 162183
Cldn2 X 139800828 to 139811386 10558 + protein coding gene claudin 2
Tssr162184 X 139800943 to 139800963 20 + TSS region transcription start site region 162184
Tssr162185 X 139800968 to 139800979 11 + TSS region transcription start site region 162185
Tssr162186 X 139800981 to 139800992 11 + TSS region transcription start site region 162186
Tssr162187 X 139806064 to 139806067 3 + TSS region transcription start site region 162187
Tssr162188 X 139806069 to 139806079 10 + TSS region transcription start site region 162188
Tssr5687 X 139807510 to 139807512 2 + TSS region transcription start site region 5687
Tssr162189 X 139807758 to 139807768 10 + TSS region transcription start site region 162189
Tssr162190 X 139808253 to 139808267 14 + TSS region transcription start site region 162190
Tssr162191 X 139808271 to 139808290 19 + TSS region transcription start site region 162191
Tssr162192 X 139808517 to 139808576 59 + TSS region transcription start site region 162192
Tssr162193 X 139808595 to 139808628 33 + TSS region transcription start site region 162193
Tssr162194 X 139808633 to 139808649 16 + TSS region transcription start site region 162194
Tssr162195 X 139809106 to 139809124 18 + TSS region transcription start site region 162195
Morc4 X 139821632 to 139871677 50045 - protein coding gene microrchidia 4
Tssr164221 X 139822414 to 139822419 5 - TSS region transcription start site region 164221
Tssr164222 X 139834738 to 139834744 6 - TSS region transcription start site region 164222
Cpgi22967 X 139870818 to 139871791 973 CpG island CpG island 22967
Tssr164223 X 139871478 to 139871489 11 - TSS region transcription start site region 164223
Tssr164224 X 139871507 to 139871515 8 - TSS region transcription start site region 164224
Tssr164225 X 139871615 to 139871630 15 - TSS region transcription start site region 164225
Tssr164226 X 139871637 to 139871670 33 - TSS region transcription start site region 164226
Rbm41 X 139889511 to 139998595 109084 - protein coding gene RNA binding motif protein 41
Gm15011 X 139892955 to 139894415 1460 + pseudogene predicted gene 15011
Tssr162196 X 139953852 to 139953853 1 + TSS region transcription start site region 162196
Tssr164227 X 139997848 to 139997864 16 - TSS region transcription start site region 164227
Tssr164228 X 139998519 to 139998566 47 - TSS region transcription start site region 164228
Nup62cl X 140006802 to 140062707 55905 - protein coding gene nucleoporin 62 C-terminal like
Cpgi22968 X 140061119 to 140061819 700 CpG island CpG island 22968
Cpgi22969 X 140062066 to 140062743 677 CpG island CpG island 22969
Tssr164229 X 140062295 to 140062340 45 - TSS region transcription start site region 164229
Tssr164230 X 140062448 to 140062460 12 - TSS region transcription start site region 164230
Tssr164231 X 140062550 to 140062583 33 - TSS region transcription start site region 164231
Tssr164232 X 140062584 to 140062605 21 - TSS region transcription start site region 164232
Tssr164233 X 140062719 to 140062726 7 - TSS region transcription start site region 164233
Tssr162197 X 140062874 to 140062889 15 + TSS region transcription start site region 162197
Pih1h3b X 140062879 to 140106797 43918 + protein coding gene PIH1 domain containing 3B
Tssr162198 X 140062904 to 140062928 24 + TSS region transcription start site region 162198
Gm6298 X 140084480 to 140085460 980 - pseudogene predicted gene 6298
Gm39537 X 140127729 to 140139265 11536 - lncRNA gene predicted gene, 39537
Gm15046 X 140178698 to 140277862 99164 - lincRNA gene predicted gene 15046
DXMit175 X 140205161 to 140205335 174 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 175
Cpgi22970 X 140277405 to 140278715 1310 CpG island CpG island 22970
Tssr162199 X 140277742 to 140277755 13 + TSS region transcription start site region 162199
Tssr162200 X 140277756 to 140277765 9 + TSS region transcription start site region 162200
DXMit131 X 140302317 to 140302463 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 131
Mhysq2 X 140302463 to 72410246 -67892217 QTL male hybrid sterility QTL 2
Mir3475 X 140310948 to 140311012 64 + miRNA gene microRNA 3475
Gm32113 X 140333846 to 140387121 53275 - lncRNA gene predicted gene, 32113
Frmpd3 X 140342263 to 140435467 93204 + protein coding gene FERM and PDZ domain containing 3
Tssr164234 X 140384704 to 140384706 2 - TSS region transcription start site region 164234
Tssr164235 X 140385858 to 140385870 12 - TSS region transcription start site region 164235
Gm8097 X 140445554 to 140446382 828 - pseudogene predicted gene 8097
Cpgi22971 X 140456585 to 140457284 699 CpG island CpG island 22971
Prps1 X 140456613 to 140476140 19527 + protein coding gene phosphoribosyl pyrophosphate synthetase 1
Tssr162201 X 140456618 to 140456632 14 + TSS region transcription start site region 162201
Tssr162202 X 140461119 to 140461123 4 + TSS region transcription start site region 162202
Tssr164236 X 140505848 to 140505874 26 - TSS region transcription start site region 164236
Tssr162203 X 140506113 to 140506129 16 + TSS region transcription start site region 162203
Gm39538 X 140525541 to 140534432 8891 - lncRNA gene predicted gene, 39538
Tssr164237 X 140537754 to 140537791 37 - TSS region transcription start site region 164237
Tsc22d3 X 140539528 to 140600522 60994 - protein coding gene TSC22 domain family, member 3
Tssr164238 X 140542595 to 140542604 9 - TSS region transcription start site region 164238
Tssr164239 X 140542612 to 140542688 76 - TSS region transcription start site region 164239
Tssr164240 X 140542991 to 140542994 3 - TSS region transcription start site region 164240
Tssr164241 X 140543069 to 140543080 11 - TSS region transcription start site region 164241
Tssr164242 X 140543097 to 140543108 11 - TSS region transcription start site region 164242
Tssr164243 X 140543114 to 140543130 16 - TSS region transcription start site region 164243
Tssr164244 X 140543143 to 140543153 10 - TSS region transcription start site region 164244
Tssr164245 X 140543160 to 140543166 6 - TSS region transcription start site region 164245
Tssr164246 X 140543177 to 140543195 18 - TSS region transcription start site region 164246
Tssr164247 X 140548588 to 140548599 11 - TSS region transcription start site region 164247
Tssr164248 X 140589412 to 140589418 6 - TSS region transcription start site region 164248
Cpgi22972 X 140598271 to 140600653 2382 CpG island CpG island 22972
Tssr164249 X 140598586 to 140598590 4 - TSS region transcription start site region 164249
Tssr5688 X 140598924 to 140598925 1 + TSS region transcription start site region 5688
Tssr164250 X 140599106 to 140599154 48 - TSS region transcription start site region 164250
Tssr164251 X 140599200 to 140599220 20 - TSS region transcription start site region 164251
Tssr164252 X 140599447 to 140599449 2 - TSS region transcription start site region 164252
Tssr164253 X 140599475 to 140599490 15 - TSS region transcription start site region 164253
Tssr164254 X 140599503 to 140599518 15 - TSS region transcription start site region 164254
Tssr164255 X 140599707 to 140599713 6 - TSS region transcription start site region 164255
Tssr164256 X 140600497 to 140600525 28 - TSS region transcription start site region 164256