Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:139577754-141497791

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf128 X 139563340 to 139673145 109805 + protein coding gene ring finger protein 128
Tssr162160 X 139610209 to 139610238 29 + TSS region transcription start site region 162160
Cpgi22965 X 139610359 to 139611300 941 CpG island CpG island 22965
Tssr162161 X 139610596 to 139610600 4 + TSS region transcription start site region 162161
Tssr162162 X 139610612 to 139610632 20 + TSS region transcription start site region 162162
Tssr5685 X 139610660 to 139610672 12 + TSS region transcription start site region 5685
Tssr162163 X 139617384 to 139617395 11 + TSS region transcription start site region 162163
Tssr162164 X 139618524 to 139618532 8 + TSS region transcription start site region 162164
Tssr162165 X 139621504 to 139621521 17 + TSS region transcription start site region 162165
Tssr162166 X 139651699 to 139651718 19 + TSS region transcription start site region 162166
Gm24380 X 139654294 to 139654617 323 - unclassified non-coding RNA gene predicted gene, 24380
Tssr162167 X 139665420 to 139665432 12 + TSS region transcription start site region 162167
Tssr162168 X 139671772 to 139671787 15 + TSS region transcription start site region 162168
Tssr162169 X 139671851 to 139671862 11 + TSS region transcription start site region 162169
Tssr162170 X 139671921 to 139671933 12 + TSS region transcription start site region 162170
Tssr162171 X 139672010 to 139672025 15 + TSS region transcription start site region 162171
Tssr162172 X 139672030 to 139672051 21 + TSS region transcription start site region 162172
Tssr162173 X 139672108 to 139672117 9 + TSS region transcription start site region 162173
Tssr162174 X 139672122 to 139672154 32 + TSS region transcription start site region 162174
Tssr162175 X 139672190 to 139672205 15 + TSS region transcription start site region 162175
Tssr162176 X 139672269 to 139672296 27 + TSS region transcription start site region 162176
Tssr162177 X 139672347 to 139672361 14 + TSS region transcription start site region 162177
Gm6322 X 139676087 to 139677489 1402 - pseudogene predicted gene 6322
Tssr162178 X 139684954 to 139684968 14 + TSS region transcription start site region 162178
Tssr162179 X 139684980 to 139685082 102 + TSS region transcription start site region 162179
Tbc1d8b X 139684996 to 139753405 68409 + protein coding gene TBC1 domain family, member 8B
Cpgi22966 X 139685010 to 139685668 658 CpG island CpG island 22966
Gm15013 X 139713681 to 139714481 800 - pseudogene predicted gene 15013
Tssr164218 X 139714503 to 139714507 4 - TSS region transcription start site region 164218
Ripply1 X 139779681 to 139782353 2672 - protein coding gene ripply transcriptional repressor 1
Tssr164219 X 139782359 to 139782368 9 - TSS region transcription start site region 164219
Tssr5686 X 139782495 to 139782496 1 - TSS region transcription start site region 5686
Tssr162180 X 139792591 to 139792623 32 + TSS region transcription start site region 162180
Gm15012 X 139795000 to 139795105 105 - pseudogene predicted gene 15012
Tssr164220 X 139796370 to 139796399 29 - TSS region transcription start site region 164220
Tssr162181 X 139800699 to 139800724 25 + TSS region transcription start site region 162181
Tssr162182 X 139800730 to 139800741 11 + TSS region transcription start site region 162182
Tssr162183 X 139800795 to 139800811 16 + TSS region transcription start site region 162183
Cldn2 X 139800828 to 139811386 10558 + protein coding gene claudin 2
Tssr162184 X 139800943 to 139800963 20 + TSS region transcription start site region 162184
Tssr162185 X 139800968 to 139800979 11 + TSS region transcription start site region 162185
Tssr162186 X 139800981 to 139800992 11 + TSS region transcription start site region 162186
Tssr162187 X 139806064 to 139806067 3 + TSS region transcription start site region 162187
Tssr162188 X 139806069 to 139806079 10 + TSS region transcription start site region 162188
Tssr5687 X 139807510 to 139807512 2 + TSS region transcription start site region 5687
Tssr162189 X 139807758 to 139807768 10 + TSS region transcription start site region 162189
Tssr162190 X 139808253 to 139808267 14 + TSS region transcription start site region 162190
Tssr162191 X 139808271 to 139808290 19 + TSS region transcription start site region 162191
Tssr162192 X 139808517 to 139808576 59 + TSS region transcription start site region 162192
Tssr162193 X 139808595 to 139808628 33 + TSS region transcription start site region 162193
Tssr162194 X 139808633 to 139808649 16 + TSS region transcription start site region 162194
Tssr162195 X 139809106 to 139809124 18 + TSS region transcription start site region 162195
Morc4 X 139821632 to 139871677 50045 - protein coding gene microrchidia 4
Tssr164221 X 139822414 to 139822419 5 - TSS region transcription start site region 164221
Tssr164222 X 139834738 to 139834744 6 - TSS region transcription start site region 164222
Cpgi22967 X 139870818 to 139871791 973 CpG island CpG island 22967
Tssr164223 X 139871478 to 139871489 11 - TSS region transcription start site region 164223
Tssr164224 X 139871507 to 139871515 8 - TSS region transcription start site region 164224
Tssr164225 X 139871615 to 139871630 15 - TSS region transcription start site region 164225
Tssr164226 X 139871637 to 139871670 33 - TSS region transcription start site region 164226
Rbm41 X 139889511 to 139998595 109084 - protein coding gene RNA binding motif protein 41
Gm15011 X 139892955 to 139894415 1460 + pseudogene predicted gene 15011
Tssr162196 X 139953852 to 139953853 1 + TSS region transcription start site region 162196
Tssr164227 X 139997848 to 139997864 16 - TSS region transcription start site region 164227
Tssr164228 X 139998519 to 139998566 47 - TSS region transcription start site region 164228
Nup62cl X 140006802 to 140062707 55905 - protein coding gene nucleoporin 62 C-terminal like
Cpgi22968 X 140061119 to 140061819 700 CpG island CpG island 22968
Cpgi22969 X 140062066 to 140062743 677 CpG island CpG island 22969
Tssr164229 X 140062295 to 140062340 45 - TSS region transcription start site region 164229
Tssr164230 X 140062448 to 140062460 12 - TSS region transcription start site region 164230
Tssr164231 X 140062550 to 140062583 33 - TSS region transcription start site region 164231
Tssr164232 X 140062584 to 140062605 21 - TSS region transcription start site region 164232
Tssr164233 X 140062719 to 140062726 7 - TSS region transcription start site region 164233
Tssr162197 X 140062874 to 140062889 15 + TSS region transcription start site region 162197
Pih1h3b X 140062879 to 140106797 43918 + protein coding gene PIH1 domain containing 3B
Tssr162198 X 140062904 to 140062928 24 + TSS region transcription start site region 162198
Gm6298 X 140084480 to 140085460 980 - pseudogene predicted gene 6298
Gm39537 X 140127729 to 140139265 11536 - lncRNA gene predicted gene, 39537
Gm15046 X 140178698 to 140277862 99164 - lincRNA gene predicted gene 15046
DXMit175 X 140205161 to 140205335 174 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 175
Cpgi22970 X 140277405 to 140278715 1310 CpG island CpG island 22970
Tssr162199 X 140277742 to 140277755 13 + TSS region transcription start site region 162199
Tssr162200 X 140277756 to 140277765 9 + TSS region transcription start site region 162200
DXMit131 X 140302317 to 140302463 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 131
Mhysq2 X 140302463 to 72410246 -67892217 QTL male hybrid sterility QTL 2
Mir3475 X 140310948 to 140311012 64 + miRNA gene microRNA 3475
Gm32113 X 140333846 to 140387121 53275 - lncRNA gene predicted gene, 32113
Frmpd3 X 140342263 to 140435467 93204 + protein coding gene FERM and PDZ domain containing 3
Tssr164234 X 140384704 to 140384706 2 - TSS region transcription start site region 164234
Tssr164235 X 140385858 to 140385870 12 - TSS region transcription start site region 164235
Gm8097 X 140445554 to 140446382 828 - pseudogene predicted gene 8097
Cpgi22971 X 140456585 to 140457284 699 CpG island CpG island 22971
Prps1 X 140456613 to 140476140 19527 + protein coding gene phosphoribosyl pyrophosphate synthetase 1
Tssr162201 X 140456618 to 140456632 14 + TSS region transcription start site region 162201
Tssr162202 X 140461119 to 140461123 4 + TSS region transcription start site region 162202
Tssr164236 X 140505848 to 140505874 26 - TSS region transcription start site region 164236
Tssr162203 X 140506113 to 140506129 16 + TSS region transcription start site region 162203
Gm39538 X 140525541 to 140534432 8891 - lncRNA gene predicted gene, 39538
Tssr164237 X 140537754 to 140537791 37 - TSS region transcription start site region 164237
Tsc22d3 X 140539528 to 140600522 60994 - protein coding gene TSC22 domain family, member 3
Tssr164238 X 140542595 to 140542604 9 - TSS region transcription start site region 164238
Tssr164239 X 140542612 to 140542688 76 - TSS region transcription start site region 164239
Tssr164240 X 140542991 to 140542994 3 - TSS region transcription start site region 164240
Tssr164241 X 140543069 to 140543080 11 - TSS region transcription start site region 164241
Tssr164242 X 140543097 to 140543108 11 - TSS region transcription start site region 164242
Tssr164243 X 140543114 to 140543130 16 - TSS region transcription start site region 164243
Tssr164244 X 140543143 to 140543153 10 - TSS region transcription start site region 164244
Tssr164245 X 140543160 to 140543166 6 - TSS region transcription start site region 164245
Tssr164246 X 140543177 to 140543195 18 - TSS region transcription start site region 164246
Tssr164247 X 140548588 to 140548599 11 - TSS region transcription start site region 164247
Tssr164248 X 140589412 to 140589418 6 - TSS region transcription start site region 164248
Cpgi22972 X 140598271 to 140600653 2382 CpG island CpG island 22972
Tssr164249 X 140598586 to 140598590 4 - TSS region transcription start site region 164249
Tssr5688 X 140598924 to 140598925 1 + TSS region transcription start site region 5688
Tssr164250 X 140599106 to 140599154 48 - TSS region transcription start site region 164250
Tssr164251 X 140599200 to 140599220 20 - TSS region transcription start site region 164251
Tssr164252 X 140599447 to 140599449 2 - TSS region transcription start site region 164252
Tssr164253 X 140599475 to 140599490 15 - TSS region transcription start site region 164253
Tssr164254 X 140599503 to 140599518 15 - TSS region transcription start site region 164254
Tssr164255 X 140599707 to 140599713 6 - TSS region transcription start site region 164255
Tssr164256 X 140600497 to 140600525 28 - TSS region transcription start site region 164256
Gm15047 X 140621683 to 140622136 453 - pseudogene predicted gene 15047
Gm22025 X 140641960 to 140642261 301 - unclassified non-coding RNA gene predicted gene, 22025
Tssr164257 X 140642259 to 140642261 2 - TSS region transcription start site region 164257
Tssr162204 X 140664296 to 140664326 30 + TSS region transcription start site region 162204
Tssr5689 X 140664331 to 140664342 11 + TSS region transcription start site region 5689
Tssr162205 X 140664531 to 140664554 23 + TSS region transcription start site region 162205
Cpgi22973 X 140664546 to 140665813 1267 CpG island CpG island 22973
Tssr162206 X 140664565 to 140664601 36 + TSS region transcription start site region 162206
Mid2 X 140664599 to 140767715 103116 + protein coding gene midline 2
Tssr162207 X 140664697 to 140664729 32 + TSS region transcription start site region 162207
Tssr162208 X 140664831 to 140664850 19 + TSS region transcription start site region 162208
Tssr162209 X 140664871 to 140664882 11 + TSS region transcription start site region 162209
Tssr162210 X 140664908 to 140664942 34 + TSS region transcription start site region 162210
Gm23199 X 140679696 to 140679802 106 + snRNA gene predicted gene, 23199
Eif2c5 X 140776288 to 140796880 20592 + unclassified gene eukaryotic translation initiation factor 2C, 5
Tssr162211 X 140797302 to 140797314 12 + TSS region transcription start site region 162211
Gm6088 X 140797396 to 140799934 2538 + pseudogene predicted gene 6088
Tex13b X 140808307 to 140813433 5126 - protein coding gene testis expressed 13B
Tssr164258 X 140813462 to 140813467 5 - TSS region transcription start site region 164258
Gm7091 X 140821936 to 140822521 585 - pseudogene predicted gene 7091
Tssr164259 X 140822555 to 140822575 20 - TSS region transcription start site region 164259
Tssr162212 X 140907511 to 140907533 22 + TSS region transcription start site region 162212
Tssr162213 X 140907554 to 140907557 3 + TSS region transcription start site region 162213
Tssr162214 X 140907602 to 140907635 33 + TSS region transcription start site region 162214
Vsig1 X 140907608 to 140939472 31864 + protein coding gene V-set and immunoglobulin domain containing 1
Tssr162215 X 140923168 to 140923171 3 + TSS region transcription start site region 162215
Tssr162216 X 140923178 to 140923181 3 + TSS region transcription start site region 162216
Tssr162217 X 140923193 to 140923209 16 + TSS region transcription start site region 162217
Psmd10 X 140948425 to 140956711 8286 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
Tssr162218 X 140953832 to 140953862 30 + TSS region transcription start site region 162218
Tssr162219 X 140953871 to 140953906 35 + TSS region transcription start site region 162219
Tssr164260 X 140956644 to 140956657 13 - TSS region transcription start site region 164260
Tssr164261 X 140956666 to 140956673 7 - TSS region transcription start site region 164261
Tssr164262 X 140956675 to 140956717 42 - TSS region transcription start site region 164262
Tssr162220 X 140956892 to 140956923 31 + TSS region transcription start site region 162220
Atg4a X 140956907 to 141164270 207363 + protein coding gene autophagy related 4A, cysteine peptidase
Tssr5690 X 140956939 to 140956954 15 + TSS region transcription start site region 5690
Tssr162221 X 140957239 to 140957253 14 + TSS region transcription start site region 162221
Tssr162222 X 140979823 to 140979860 37 + TSS region transcription start site region 162222
Tssr162223 X 140979883 to 140979931 48 + TSS region transcription start site region 162223
Tssr162224 X 140998305 to 140998316 11 + TSS region transcription start site region 162224
Tssr5691 X 140998786 to 140998805 19 + TSS region transcription start site region 5691
Tssr162225 X 141150493 to 141150504 11 + TSS region transcription start site region 162225
Col4a6 X 141165403 to 141474076 308673 - protein coding gene collagen, type IV, alpha 6
Gm39539 X 141182900 to 141188927 6027 + lncRNA gene predicted gene, 39539
Tssr164263 X 141207547 to 141207550 3 - TSS region transcription start site region 164263
Tssr164264 X 141207581 to 141207589 8 - TSS region transcription start site region 164264
Tssr164265 X 141207592 to 141207608 16 - TSS region transcription start site region 164265
Tssr164266 X 141207621 to 141207629 8 - TSS region transcription start site region 164266
Tssr164267 X 141208998 to 141209048 50 - TSS region transcription start site region 164267
Gm15077 X 141302349 to 141302710 361 - pseudogene predicted gene 15077
Gm15078 X 141356178 to 141356956 778 + pseudogene predicted gene 15078
Gm15079 X 141434973 to 141435188 215 + pseudogene predicted gene 15079
Tssr5692 X 141437846 to 141437848 2 + TSS region transcription start site region 5692
DXMit67 X 141442969 to 141443140 171 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 67
Tssr164268 X 141473853 to 141473858 5 - TSS region transcription start site region 164268
Tssr164269 X 141473880 to 141473894 14 - TSS region transcription start site region 164269
Tssr164270 X 141474034 to 141474091 57 - TSS region transcription start site region 164270
Col4a5 X 141475385 to 141689234 213849 + protein coding gene collagen, type IV, alpha 5
Tssr162226 X 141475385 to 141475468 83 + TSS region transcription start site region 162226
Tssr162227 X 141475600 to 141475612 12 + TSS region transcription start site region 162227