Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:134954591-136114316

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nxf2 X 134944526 to 134964754 20228 - protein coding gene nuclear RNA export factor 2
Del(XNxf2-Nxf3)1Jw X 134944526 to 136085255 1140729 chromosomal deletion deletion, Chr X, Jeremy Wang 1
Cpgi22945 X 134963697 to 134964017 320 CpG island CpG island 22945
Tssr164159 X 134964695 to 134964726 31 - TSS region transcription start site region 164159
Tssr164160 X 134964742 to 134964767 25 - TSS region transcription start site region 164160
Zmat1 X 134971372 to 135009209 37837 - protein coding gene zinc finger, matrin type 1
Tssr164161 X 134973136 to 134973147 11 - TSS region transcription start site region 164161
Cpgi22946 X 135008759 to 135009378 619 CpG island CpG island 22946
Tssr162015 X 135008843 to 135008857 14 + TSS region transcription start site region 162015
Tssr164162 X 135009192 to 135009225 33 - TSS region transcription start site region 164162
Tssr164163 X 135009226 to 135009236 10 - TSS region transcription start site region 164163
3632454L22Rik X 135022734 to 135060336 37602 - lncRNA gene RIKEN cDNA 3632454L22 gene
Tssr164164 X 135025307 to 135025344 37 - TSS region transcription start site region 164164
Cpgi22947 X 135035876 to 135036180 304 CpG island CpG island 22947
Tssr164165 X 135036078 to 135036090 12 - TSS region transcription start site region 164165
Tssr164166 X 135036091 to 135036099 8 - TSS region transcription start site region 164166
Gm6207 X 135119960 to 135122983 3023 - pseudogene predicted gene 6207
Gm15020 X 135122878 to 135152596 29718 - unclassified non-coding RNA gene predicted gene 15020
Gm25868 X 135165848 to 135165961 113 + snoRNA gene predicted gene, 25868
Gm15023 X 135167624 to 135177632 10008 - protein coding gene predicted gene 15023
Tceal6 X 135208687 to 135210687 2000 - protein coding gene transcription elongation factor A (SII)-like 6
Tssr164167 X 135210605 to 135210612 7 - TSS region transcription start site region 164167
Tssr164168 X 135210621 to 135210630 9 - TSS region transcription start site region 164168
Tssr164169 X 135210640 to 135210661 21 - TSS region transcription start site region 164169
Tssr164170 X 135210672 to 135210700 28 - TSS region transcription start site region 164170
Tssr164171 X 135210765 to 135210789 24 - TSS region transcription start site region 164171
Gm15022 X 135240154 to 135240899 745 + pseudogene predicted gene 15022
Tssr162016 X 135263307 to 135263316 9 + TSS region transcription start site region 162016
Pramel X 135270853 to 135274214 3361 + pseudogene preferentially expressed antigen in melanoma-like
Pramel3 X 135302307 to 135312652 10345 + protein coding gene preferentially expressed antigen in melanoma-like 3
Gm25936 X 135314316 to 135314429 113 - snoRNA gene predicted gene, 25936
Gm15017 X 135329761 to 135349127 19366 + unclassified non-coding RNA gene predicted gene 15017
Gm6215 X 135349021 to 135352020 2999 + pseudogene predicted pseudogene 6215
Gm5128 X 135373284 to 135383393 10109 + protein coding gene predicted gene 5128
Gm22006 X 135384915 to 135385028 113 - snoRNA gene predicted gene, 22006
Gm6221 X 135409856 to 135412952 3096 + pseudogene predicted pseudogene 6221
Gm7903 X 135433835 to 135443830 9995 + protein coding gene predicted gene 7903
Gm24416 X 135445519 to 135445632 113 - snoRNA gene predicted gene, 24416
Gm7905 X 135470455 to 135473527 3072 + pseudogene predicted pseudogene 7905
AV320801 X 135494588 to 135504594 10006 + protein coding gene expressed sequence AV320801
Gm22233 X 135506257 to 135506370 113 - snoRNA gene predicted gene, 22233
Gm15015 X 135519591 to 135549316 29725 + unclassified non-coding RNA gene predicted gene 15015
Gm6228 X 135549209 to 135552220 3011 + pseudogene predicted gene 6228
Nxf7 X 135579555 to 135598777 19222 - protein coding gene nuclear RNA export factor 7
Tssr164172 X 135598778 to 135598786 8 - TSS region transcription start site region 164172
Prame X 135613002 to 135627705 14703 - protein coding gene preferentially expressed antigen in melanoma
Gm15021 X 135615994 to 135616732 738 + pseudogene predicted gene 15021
Tssr164173 X 135627682 to 135627693 11 - TSS region transcription start site region 164173
Tcp11x2 X 135654698 to 135693790 39092 - protein coding gene t-complex 11 family, X-linked 2
Tssr164174 X 135693783 to 135693795 12 - TSS region transcription start site region 164174
Tssr162017 X 135707173 to 135707174 1 + TSS region transcription start site region 162017
Tmsb15a X 135718667 to 135725261 6594 - protein coding gene thymosin beta 15a
Tssr164175 X 135720627 to 135720641 14 - TSS region transcription start site region 164175
Gm15019 X 135726998 to 135729474 2476 + pseudogene predicted gene 15019
Cpgi22948 X 135742524 to 135742726 202 CpG island CpG island 22948
Tssr162018 X 135742686 to 135742744 58 + TSS region transcription start site region 162018
Armcx5 X 135742733 to 135747322 4589 + protein coding gene armadillo repeat containing, X-linked 5
Gprasp1 X 135742733 to 135803474 60741 + protein coding gene G protein-coupled receptor associated sorting protein 1
Mir7646 X 135746716 to 135746769 53 + miRNA gene microRNA 7646
E430010N07Rik X 135763398 to 135766373 2975 unclassified gene RIKEN cDNA E430010N07 gene
Gm18614 X 135784341 to 135784910 569 + pseudogene predicted gene, 18614
Mir1970 X 135786114 to 135786217 103 - miRNA gene microRNA 1970
Tssr162019 X 135796113 to 135796164 51 + TSS region transcription start site region 162019
Tssr162020 X 135796217 to 135796251 34 + TSS region transcription start site region 162020
Tssr162021 X 135800894 to 135800905 11 + TSS region transcription start site region 162021
Tssr162022 X 135801184 to 135801196 12 + TSS region transcription start site region 162022
Gprasp2 X 135839034 to 135844730 5696 + protein coding gene G protein-coupled receptor associated sorting protein 2
Tssr162023 X 135839040 to 135839075 35 + TSS region transcription start site region 162023
Tssr162024 X 135839079 to 135839086 7 + TSS region transcription start site region 162024
Tssr162025 X 135839171 to 135839175 4 + TSS region transcription start site region 162025
Bhlhb9 X 135841639 to 135891081 49442 + protein coding gene basic helix-loop-helix domain containing, class B9
Tssr162026 X 135885860 to 135885897 37 + TSS region transcription start site region 162026
Cpgi22949 X 135885896 to 135886325 429 CpG island CpG island 22949
Tssr162027 X 135885903 to 135885943 40 + TSS region transcription start site region 162027
Tssr162028 X 135885949 to 135885978 29 + TSS region transcription start site region 162028
Tssr162029 X 135885986 to 135886019 33 + TSS region transcription start site region 162029
B930008F14Rik X 135910996 to 135915353 4357 unclassified gene RIKEN cDNA B930008F14 gene
Gm31214 X 135970767 to 135983650 12883 + lncRNA gene predicted gene, 31214
DXMit233 X 135981553 to 135981667 114 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 233
1110065H08Rik X 135982662 to 135983644 982 unclassified gene RIKEN cDNA 1110065H08 gene
Gm15016 X 135988547 to 135989266 719 + pseudogene predicted gene 15016
Arxes2 X 135993824 to 135995355 1531 + protein coding gene adipocyte-related X-chromosome expressed sequence 2
Arxes1 X 136033367 to 136034946 1579 + protein coding gene adipocyte-related X-chromosome expressed sequence 1
Tssr164176 X 136051207 to 136051218 11 - TSS region transcription start site region 164176
Bex2 X 136066565 to 136068236 1671 - protein coding gene brain expressed X-linked 2
Cpgi22950 X 136068199 to 136068392 193 CpG island CpG island 22950
Nxf3 X 136072099 to 136085255 13156 - protein coding gene nuclear RNA export factor 3
Tssr164177 X 136085168 to 136085173 5 - TSS region transcription start site region 164177
Tssr164178 X 136085196 to 136085204 8 - TSS region transcription start site region 164178
Tssr164179 X 136085206 to 136085250 44 - TSS region transcription start site region 164179
Tssr164180 X 136085386 to 136085403 17 - TSS region transcription start site region 164180
DXMit174 X 136088345 to 136088434 89 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 174
5730412P04Rik X 136104603 to 136115420 10817 + lncRNA gene RIKEN cDNA 5730412P04 gene