Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:67064437-68455930

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
Gm10646 9 67102300 to 67109601 7301 + lincRNA gene predicted gene 10646
Gm22145 9 67104208 to 67104355 147 + snRNA gene predicted gene, 22145
Gm19299 9 67133561 to 67163788 30227 + lincRNA gene predicted gene, 19299
Tssr90326 9 67155219 to 67155231 12 - TSS region transcription start site region 90326
Tssr90327 9 67155246 to 67155264 18 - TSS region transcription start site region 90327
D9Mit302.1 9 67155341 to 67155492 151 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 302.1
D9Mit302 9 67155562 to 67155667 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 302
D9Dcr5 9 67155565 to 67155660 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 5
Gm40529 9 67156369 to 67178243 21874 - lncRNA gene predicted gene, 40529
Tssr85795 9 67191621 to 67191662 41 + TSS region transcription start site region 85795
Tssr85796 9 67205061 to 67205093 32 + TSS region transcription start site region 85796
Tssr90328 9 67208348 to 67208368 20 - TSS region transcription start site region 90328
Tln2 9 67217087 to 67559703 342616 - protein coding gene talin 2
Mir190a 9 67236660 to 67236726 66 - miRNA gene microRNA 190a
D9Mit32 9 67244038 to 67244166 128 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 32
Bdln4 9 67244038 to 67244166 128 QTL body length 4
Tssr90329 9 67250892 to 67250899 7 - TSS region transcription start site region 90329
Tssr90330 9 67262087 to 67262106 19 - TSS region transcription start site region 90330
Tssr90331 9 67262140 to 67262147 7 - TSS region transcription start site region 90331
Tssr90332 9 67266900 to 67266910 10 - TSS region transcription start site region 90332
Tssr90333 9 67266919 to 67266930 11 - TSS region transcription start site region 90333
Tssr90334 9 67290288 to 67290292 4 - TSS region transcription start site region 90334
Tssr90335 9 67299236 to 67299281 45 - TSS region transcription start site region 90335
Tssr90336 9 67299297 to 67299308 11 - TSS region transcription start site region 90336
Tssr90337 9 67318579 to 67318591 12 - TSS region transcription start site region 90337
Tssr90338 9 67321962 to 67321973 11 - TSS region transcription start site region 90338
Tssr90339 9 67327647 to 67327666 19 - TSS region transcription start site region 90339
Tssr90340 9 67327667 to 67327688 21 - TSS region transcription start site region 90340
Tssr2922 9 67420199 to 67420201 2 + TSS region transcription start site region 2922
Gm47047 9 67424503 to 67427491 2988 + antisense lncRNA gene predicted gene, 47047
Tssr90341 9 67428818 to 67428867 49 - TSS region transcription start site region 90341
Tssr90342 9 67485186 to 67485200 14 - TSS region transcription start site region 90342
D9Dcr6 9 67529227 to 67529322 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 6
D9Mit337 9 67570866 to 67570990 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 337
Tssr90343 9 67573190 to 67573224 34 - TSS region transcription start site region 90343
Tssr90344 9 67573226 to 67573269 43 - TSS region transcription start site region 90344
Tssr90345 9 67573293 to 67573311 18 - TSS region transcription start site region 90345
Cpgi21979 9 67632439 to 67634426 1987 CpG island CpG island 21979
Tssr90346 9 67633932 to 67633944 12 - TSS region transcription start site region 90346
Tssr90347 9 67633981 to 67634078 97 - TSS region transcription start site region 90347
Gm39365 9 67634190 to 67638954 4764 + lncRNA gene predicted gene, 39365
Tssr2923 9 67636107 to 67636126 19 + TSS region transcription start site region 2923
Gm30936 9 67689410 to 67694193 4783 - lncRNA gene predicted gene, 30936
Cpgi21980 9 67699939 to 67700315 376 CpG island CpG island 21980
Gm47110 9 67700181 to 67700585 404 + pseudogene predicted gene, 47110
Tssr90348 9 67703670 to 67703673 3 - TSS region transcription start site region 90348
Tssr90349 9 67707029 to 67707031 2 - TSS region transcription start site region 90349
Tssr90350 9 67710906 to 67710910 4 - TSS region transcription start site region 90350
Tssr90351 9 67713492 to 67713496 4 - TSS region transcription start site region 90351
Mir7241 9 67727717 to 67727780 63 - miRNA gene microRNA 7241
Mir7242 9 67729499 to 67729577 78 - miRNA gene microRNA 7242
Tssr90352 9 67733738 to 67733749 11 - TSS region transcription start site region 90352
Tssr90353 9 67733755 to 67733764 9 - TSS region transcription start site region 90353
Tssr90354 9 67733766 to 67733791 25 - TSS region transcription start site region 90354
Tssr90355 9 67733798 to 67733803 5 - TSS region transcription start site region 90355
Cpgi21981 9 67733839 to 67733994 155 CpG island CpG island 21981
Tssr85797 9 67733939 to 67733952 13 + TSS region transcription start site region 85797
Tssr85798 9 67733960 to 67733972 12 + TSS region transcription start site region 85798
Gm7787 9 67748077 to 67748764 687 - pseudogene predicted gene 7787
Tssr85799 9 67757515 to 67757518 3 + TSS region transcription start site region 85799
M5C1000I18Rik 9 67758712 to 67760230 1518 - lincRNA gene RIKEN cDNA M5C1000I18 gene
Cpgi21982 9 67759261 to 67760875 1614 CpG island CpG island 21982
Tssr85800 9 67759423 to 67759428 5 + TSS region transcription start site region 85800
C2cd4b 9 67759437 to 67760930 1493 + protein coding gene C2 calcium-dependent domain containing 4B
Tssr90356 9 67817986 to 67818024 38 - TSS region transcription start site region 90356
C2cd4a 9 67830532 to 67832330 1798 - protein coding gene C2 calcium-dependent domain containing 4A
Cpgi21983 9 67830561 to 67831888 1327 CpG island CpG island 21983
Tssr90357 9 67832325 to 67832331 6 - TSS region transcription start site region 90357
Cpgi21984 9 67839841 to 67840795 954 CpG island CpG island 21984
Tssr85801 9 67840331 to 67840358 27 + TSS region transcription start site region 85801
Tssr85802 9 67840363 to 67840372 9 + TSS region transcription start site region 85802
Tssr85803 9 67840380 to 67840383 3 + TSS region transcription start site region 85803
Tssr85804 9 67840386 to 67840429 43 + TSS region transcription start site region 85804
Vps13c 9 67840396 to 67995638 155242 + protein coding gene vacuolar protein sorting 13C
Tssr85805 9 67840447 to 67840454 7 + TSS region transcription start site region 85805
Tssr85806 9 67852487 to 67852505 18 + TSS region transcription start site region 85806
Tssr85807 9 67854306 to 67854323 17 + TSS region transcription start site region 85807
Tssr85808 9 67858827 to 67858845 18 + TSS region transcription start site region 85808
Tssr85809 9 67858846 to 67858865 19 + TSS region transcription start site region 85809
Tssr85810 9 67862289 to 67862298 9 + TSS region transcription start site region 85810
Tssr85811 9 67880427 to 67880450 23 + TSS region transcription start site region 85811
Tssr85812 9 67891807 to 67891814 7 + TSS region transcription start site region 85812
Tssr85813 9 67903601 to 67903608 7 + TSS region transcription start site region 85813
Tssr85814 9 67935297 to 67935329 32 + TSS region transcription start site region 85814
Tssr85815 9 67984675 to 67984678 3 + TSS region transcription start site region 85815
D9Dcr7 9 67993744 to 67993852 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 7
Tssr85816 9 67996392 to 67996422 30 + TSS region transcription start site region 85816
Tssr85817 9 67996524 to 67996538 14 + TSS region transcription start site region 85817
Tssr85818 9 67996618 to 67996676 58 + TSS region transcription start site region 85818
Gm20745 9 68017964 to 68025714 7750 - lincRNA gene predicted gene, 20745
Gm28195 9 68235029 to 68235400 371 + lincRNA gene predicted gene 28195
Gm22382 9 68280574 to 68280703 129 + snoRNA gene predicted gene, 22382
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987