Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:66864437-68655930

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Rab8b 9 66843664 to 66919687 76023 - protein coding gene RAB8B, member RAS oncogene family
Gm40528 9 66872060 to 66883930 11870 + lncRNA gene predicted gene, 40528
Tssr85771 9 66872559 to 66872594 35 + TSS region transcription start site region 85771
Tssr90288 9 66879061 to 66879072 11 - TSS region transcription start site region 90288
Tssr90289 9 66881546 to 66881548 2 - TSS region transcription start site region 90289
Tssr90290 9 66882456 to 66882466 10 - TSS region transcription start site region 90290
Tssr90291 9 66901533 to 66901574 41 - TSS region transcription start site region 90291
Tssr90292 9 66915493 to 66915508 15 - TSS region transcription start site region 90292
Tssr85772 9 66915648 to 66915691 43 + TSS region transcription start site region 85772
Tssr90293 9 66916601 to 66916610 9 - TSS region transcription start site region 90293
Tssr90294 9 66918340 to 66918377 37 - TSS region transcription start site region 90294
Tssr85773 9 66918838 to 66918862 24 + TSS region transcription start site region 85773
Tssr85774 9 66918865 to 66918882 17 + TSS region transcription start site region 85774
Cpgi21974 9 66919018 to 66919943 925 CpG island CpG island 21974
Tssr90295 9 66919166 to 66919197 31 - TSS region transcription start site region 90295
Tssr90296 9 66919646 to 66919710 64 - TSS region transcription start site region 90296
Cpgi21975 9 66945674 to 66946802 1128 CpG island CpG island 21975
Tssr85775 9 66946057 to 66946143 86 + TSS region transcription start site region 85775
Rps27l 9 66946086 to 66949516 3430 + protein coding gene ribosomal protein S27-like
Tssr85776 9 66946395 to 66946424 29 + TSS region transcription start site region 85776
Tssr85777 9 66946428 to 66946452 24 + TSS region transcription start site region 85777
Tssr85778 9 66946829 to 66946845 16 + TSS region transcription start site region 85778
Lactb 9 66955388 to 66975484 20096 - protein coding gene lactamase, beta
Cpgi21976 9 66974816 to 66975551 735 CpG island CpG island 21976
Tssr85779 9 66974989 to 66975003 14 + TSS region transcription start site region 85779
Tssr90297 9 66975387 to 66975459 72 - TSS region transcription start site region 90297
Tssr85780 9 66978318 to 66978342 24 + TSS region transcription start site region 85780
Gm24225 9 66981088 to 66981185 97 - snRNA gene predicted gene, 24225
Tssr85781 9 67011922 to 67011925 3 + TSS region transcription start site region 85781
Gm30639 9 67012742 to 67022505 9763 + lncRNA gene predicted gene, 30639
Tssr85782 9 67013062 to 67013074 12 + TSS region transcription start site region 85782
Tssr85783 9 67013081 to 67013092 11 + TSS region transcription start site region 85783
Tssr2921 9 67020651 to 67020654 3 + TSS region transcription start site region 2921
Tpm1 9 67022590 to 67049401 26811 - protein coding gene tropomyosin 1, alpha
Tssr90298 9 67022643 to 67022660 17 - TSS region transcription start site region 90298
Tssr90299 9 67023246 to 67023261 15 - TSS region transcription start site region 90299
Tssr90300 9 67023314 to 67023345 31 - TSS region transcription start site region 90300
Tssr90301 9 67026656 to 67026669 13 - TSS region transcription start site region 90301
Tssr90302 9 67026823 to 67026827 4 - TSS region transcription start site region 90302
Tssr90303 9 67031077 to 67031102 25 - TSS region transcription start site region 90303
Tssr85784 9 67031448 to 67031482 34 + TSS region transcription start site region 85784
Tssr90304 9 67031474 to 67031527 53 - TSS region transcription start site region 90304
Tssr90305 9 67032528 to 67032550 22 - TSS region transcription start site region 90305
Tssr85785 9 67032796 to 67032837 41 + TSS region transcription start site region 85785
Tssr90306 9 67032842 to 67032871 29 - TSS region transcription start site region 90306
Tssr90307 9 67033377 to 67033382 5 - TSS region transcription start site region 90307
Tssr85786 9 67033866 to 67033886 20 + TSS region transcription start site region 85786
Tssr85787 9 67033898 to 67033904 6 + TSS region transcription start site region 85787
Tssr90308 9 67033903 to 67033960 57 - TSS region transcription start site region 90308
Tssr85788 9 67033907 to 67033961 54 + TSS region transcription start site region 85788
Tssr90309 9 67033974 to 67034001 27 - TSS region transcription start site region 90309
Tssr85789 9 67035985 to 67036005 20 + TSS region transcription start site region 85789
Tssr90310 9 67036042 to 67036086 44 - TSS region transcription start site region 90310
Tssr90311 9 67036105 to 67036137 32 - TSS region transcription start site region 90311
Tssr85790 9 67041132 to 67041142 10 + TSS region transcription start site region 85790
Tssr85791 9 67041145 to 67041157 12 + TSS region transcription start site region 85791
Tssr85792 9 67041728 to 67041731 3 + TSS region transcription start site region 85792
Cpgi21977 9 67043339 to 67044219 880 CpG island CpG island 21977
Tssr90312 9 67043718 to 67043742 24 - TSS region transcription start site region 90312
Tssr90313 9 67043743 to 67043820 77 - TSS region transcription start site region 90313
Tssr90314 9 67043824 to 67043829 5 - TSS region transcription start site region 90314
Tssr90315 9 67043832 to 67043843 11 - TSS region transcription start site region 90315
Tssr90316 9 67043844 to 67043862 18 - TSS region transcription start site region 90316
Tssr90317 9 67043869 to 67043945 76 - TSS region transcription start site region 90317
Tssr90318 9 67043953 to 67043960 7 - TSS region transcription start site region 90318
Tssr90319 9 67043970 to 67043983 13 - TSS region transcription start site region 90319
Tssr90320 9 67044950 to 67044954 4 - TSS region transcription start site region 90320
Tssr90321 9 67046108 to 67046121 13 - TSS region transcription start site region 90321
Cpgi21978 9 67047723 to 67049791 2068 CpG island CpG island 21978
Tssr85793 9 67047794 to 67047808 14 + TSS region transcription start site region 85793
Tssr85794 9 67047824 to 67047840 16 + TSS region transcription start site region 85794
Tssr90322 9 67047828 to 67047923 95 - TSS region transcription start site region 90322
Tssr90323 9 67048153 to 67048168 15 - TSS region transcription start site region 90323
Tssr90324 9 67049200 to 67049220 20 - TSS region transcription start site region 90324
Tssr90325 9 67049646 to 67049662 16 - TSS region transcription start site region 90325
Gm10646 9 67102300 to 67109601 7301 + lincRNA gene predicted gene 10646
Gm22145 9 67104208 to 67104355 147 + snRNA gene predicted gene, 22145
Gm19299 9 67133561 to 67163788 30227 + lincRNA gene predicted gene, 19299
Tssr90326 9 67155219 to 67155231 12 - TSS region transcription start site region 90326
Tssr90327 9 67155246 to 67155264 18 - TSS region transcription start site region 90327
D9Mit302.1 9 67155341 to 67155492 151 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 302.1
D9Mit302 9 67155562 to 67155667 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 302
D9Dcr5 9 67155565 to 67155660 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 5
Gm40529 9 67156369 to 67178243 21874 - lncRNA gene predicted gene, 40529
Tssr85795 9 67191621 to 67191662 41 + TSS region transcription start site region 85795
Tssr85796 9 67205061 to 67205093 32 + TSS region transcription start site region 85796
Tssr90328 9 67208348 to 67208368 20 - TSS region transcription start site region 90328
Tln2 9 67217087 to 67559703 342616 - protein coding gene talin 2
Mir190a 9 67236660 to 67236726 66 - miRNA gene microRNA 190a
D9Mit32 9 67244038 to 67244166 128 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 32
Bdln4 9 67244038 to 67244166 128 QTL body length 4
Tssr90329 9 67250892 to 67250899 7 - TSS region transcription start site region 90329
Tssr90330 9 67262087 to 67262106 19 - TSS region transcription start site region 90330
Tssr90331 9 67262140 to 67262147 7 - TSS region transcription start site region 90331
Tssr90332 9 67266900 to 67266910 10 - TSS region transcription start site region 90332
Tssr90333 9 67266919 to 67266930 11 - TSS region transcription start site region 90333
Tssr90334 9 67290288 to 67290292 4 - TSS region transcription start site region 90334
Tssr90335 9 67299236 to 67299281 45 - TSS region transcription start site region 90335
Tssr90336 9 67299297 to 67299308 11 - TSS region transcription start site region 90336
Tssr90337 9 67318579 to 67318591 12 - TSS region transcription start site region 90337
Tssr90338 9 67321962 to 67321973 11 - TSS region transcription start site region 90338
Tssr90339 9 67327647 to 67327666 19 - TSS region transcription start site region 90339
Tssr90340 9 67327667 to 67327688 21 - TSS region transcription start site region 90340
Tssr2922 9 67420199 to 67420201 2 + TSS region transcription start site region 2922
Gm47047 9 67424503 to 67427491 2988 + antisense lncRNA gene predicted gene, 47047
Tssr90341 9 67428818 to 67428867 49 - TSS region transcription start site region 90341
Tssr90342 9 67485186 to 67485200 14 - TSS region transcription start site region 90342
D9Dcr6 9 67529227 to 67529322 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 6
D9Mit337 9 67570866 to 67570990 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 337
Tssr90343 9 67573190 to 67573224 34 - TSS region transcription start site region 90343
Tssr90344 9 67573226 to 67573269 43 - TSS region transcription start site region 90344
Tssr90345 9 67573293 to 67573311 18 - TSS region transcription start site region 90345
Cpgi21979 9 67632439 to 67634426 1987 CpG island CpG island 21979
Tssr90346 9 67633932 to 67633944 12 - TSS region transcription start site region 90346
Tssr90347 9 67633981 to 67634078 97 - TSS region transcription start site region 90347
Gm39365 9 67634190 to 67638954 4764 + lncRNA gene predicted gene, 39365
Tssr2923 9 67636107 to 67636126 19 + TSS region transcription start site region 2923
Gm30936 9 67689410 to 67694193 4783 - lncRNA gene predicted gene, 30936
Cpgi21980 9 67699939 to 67700315 376 CpG island CpG island 21980
Gm47110 9 67700181 to 67700585 404 + pseudogene predicted gene, 47110
Tssr90348 9 67703670 to 67703673 3 - TSS region transcription start site region 90348
Tssr90349 9 67707029 to 67707031 2 - TSS region transcription start site region 90349
Tssr90350 9 67710906 to 67710910 4 - TSS region transcription start site region 90350
Tssr90351 9 67713492 to 67713496 4 - TSS region transcription start site region 90351
Mir7241 9 67727717 to 67727780 63 - miRNA gene microRNA 7241
Mir7242 9 67729499 to 67729577 78 - miRNA gene microRNA 7242
Tssr90352 9 67733738 to 67733749 11 - TSS region transcription start site region 90352
Tssr90353 9 67733755 to 67733764 9 - TSS region transcription start site region 90353
Tssr90354 9 67733766 to 67733791 25 - TSS region transcription start site region 90354
Tssr90355 9 67733798 to 67733803 5 - TSS region transcription start site region 90355
Cpgi21981 9 67733839 to 67733994 155 CpG island CpG island 21981
Tssr85797 9 67733939 to 67733952 13 + TSS region transcription start site region 85797
Tssr85798 9 67733960 to 67733972 12 + TSS region transcription start site region 85798
Gm7787 9 67748077 to 67748764 687 - pseudogene predicted gene 7787
Tssr85799 9 67757515 to 67757518 3 + TSS region transcription start site region 85799
M5C1000I18Rik 9 67758712 to 67760230 1518 - lincRNA gene RIKEN cDNA M5C1000I18 gene
Cpgi21982 9 67759261 to 67760875 1614 CpG island CpG island 21982
Tssr85800 9 67759423 to 67759428 5 + TSS region transcription start site region 85800
C2cd4b 9 67759437 to 67760930 1493 + protein coding gene C2 calcium-dependent domain containing 4B
Tssr90356 9 67817986 to 67818024 38 - TSS region transcription start site region 90356
C2cd4a 9 67830532 to 67832330 1798 - protein coding gene C2 calcium-dependent domain containing 4A
Cpgi21983 9 67830561 to 67831888 1327 CpG island CpG island 21983
Tssr90357 9 67832325 to 67832331 6 - TSS region transcription start site region 90357
Cpgi21984 9 67839841 to 67840795 954 CpG island CpG island 21984
Tssr85801 9 67840331 to 67840358 27 + TSS region transcription start site region 85801
Tssr85802 9 67840363 to 67840372 9 + TSS region transcription start site region 85802
Tssr85803 9 67840380 to 67840383 3 + TSS region transcription start site region 85803
Tssr85804 9 67840386 to 67840429 43 + TSS region transcription start site region 85804
Vps13c 9 67840396 to 67995638 155242 + protein coding gene vacuolar protein sorting 13C
Tssr85805 9 67840447 to 67840454 7 + TSS region transcription start site region 85805
Tssr85806 9 67852487 to 67852505 18 + TSS region transcription start site region 85806
Tssr85807 9 67854306 to 67854323 17 + TSS region transcription start site region 85807
Tssr85808 9 67858827 to 67858845 18 + TSS region transcription start site region 85808
Tssr85809 9 67858846 to 67858865 19 + TSS region transcription start site region 85809
Tssr85810 9 67862289 to 67862298 9 + TSS region transcription start site region 85810
Tssr85811 9 67880427 to 67880450 23 + TSS region transcription start site region 85811
Tssr85812 9 67891807 to 67891814 7 + TSS region transcription start site region 85812
Tssr85813 9 67903601 to 67903608 7 + TSS region transcription start site region 85813
Tssr85814 9 67935297 to 67935329 32 + TSS region transcription start site region 85814
Tssr85815 9 67984675 to 67984678 3 + TSS region transcription start site region 85815
D9Dcr7 9 67993744 to 67993852 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 7
Tssr85816 9 67996392 to 67996422 30 + TSS region transcription start site region 85816
Tssr85817 9 67996524 to 67996538 14 + TSS region transcription start site region 85817
Tssr85818 9 67996618 to 67996676 58 + TSS region transcription start site region 85818
Gm20745 9 68017964 to 68025714 7750 - lincRNA gene predicted gene, 20745
Gm28195 9 68235029 to 68235400 371 + lincRNA gene predicted gene 28195
Gm22382 9 68280574 to 68280703 129 + snoRNA gene predicted gene, 22382
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987
Gm22169 9 68461339 to 68461445 106 - snRNA gene predicted gene, 22169
4930502A04Rik 9 68470902 to 68520200 49298 - lincRNA gene RIKEN cDNA 4930502A04 gene
Gm22962 9 68510163 to 68510235 72 + snoRNA gene predicted gene, 22962
Gm47169 9 68552395 to 68552556 161 + pseudogene predicted gene, 47169
Gm31141 9 68556289 to 68562301 6012 - lncRNA gene predicted gene, 31141
Tssr90358 9 68558606 to 68558607 1 - TSS region transcription start site region 90358
Tssr90359 9 68569252 to 68569257 5 - TSS region transcription start site region 90359
Tssr85819 9 68640575 to 68640623 48 + TSS region transcription start site region 85819
Gm31325 9 68653067 to 68653791 724 - lncRNA gene predicted gene, 31325
Cpgi21985 9 68653116 to 68655031 1915 CpG island CpG island 21985
Tssr85820 9 68653626 to 68653639 13 + TSS region transcription start site region 85820
Tssr85821 9 68653715 to 68653731 16 + TSS region transcription start site region 85821
Tssr85822 9 68653742 to 68653757 15 + TSS region transcription start site region 85822
Tssr85823 9 68653761 to 68653785 24 + TSS region transcription start site region 85823
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Cpgi21986 9 68655514 to 68655710 196 CpG island CpG island 21986