MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 9:65170099-65260176

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Igdcc3	9	65141189 to 65185872	44683	+	protein coding gene	immunoglobulin superfamily, DCC subclass, member 3
Tssr90171	9	65175272 to 65175278	6	-	TSS region	transcription start site region 90171
Tssr90172	9	65175745 to 65175747	2	-	TSS region	transcription start site region 90172
Tssr85668	9	65185752 to 65185767	15	+	TSS region	transcription start site region 85668
Tssr85669	9	65188863 to 65188864	1	+	TSS region	transcription start site region 85669
Gm40527	9	65193232 to 65212264	19032	+	lncRNA gene	predicted gene, 40527
Tssr85670	9	65195374 to 65195381	7	+	TSS region	transcription start site region 85670
Tssr85671	9	65195389 to 65195392	3	+	TSS region	transcription start site region 85671
Gm25313	9	65196572 to 65196687	115	-	snRNA gene	predicted gene, 25313
Rnu5g	9	65201726 to 65201841	115	-	snRNA gene	RNA, U5G small nuclear
Tssr85672	9	65208547 to 65208557	10	+	TSS region	transcription start site region 85672
Parp16	9	65214379 to 65239220	24841	+	protein coding gene	poly (ADP-ribose) polymerase family, member 16
Tssr85673	9	65214663 to 65214701	38	+	TSS region	transcription start site region 85673
Cpgi21942	9	65214823 to 65215849	1026		CpG island	CpG island 21942
Tssr85674	9	65215099 to 65215176	77	+	TSS region	transcription start site region 85674
Tssr85675	9	65215341 to 65215387	46	+	TSS region	transcription start site region 85675
Gm36538	9	65233847 to 65265616	31769	-	lncRNA gene	predicted gene, 36538
Tssr85676	9	65235879 to 65235884	5	+	TSS region	transcription start site region 85676