Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:57653616-57763626

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csk 9 57626646 to 57653631 26985 - protein coding gene c-src tyrosine kinase
Cyp1a2 9 57676937 to 57683655 6718 - protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 2
Tssr89812 9 57677140 to 57677145 5 - TSS region transcription start site region 89812
Tssr89813 9 57677199 to 57677208 9 - TSS region transcription start site region 89813
D9Mit101.2 9 57680203 to 57680377 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.2
D9Mit101 9 57680247 to 57680587 340 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 101
D9Mit101.1 9 57680594 to 57680732 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 101.1
Cpgi21829 9 57681587 to 57682028 441 CpG island CpG island 21829
Tssr89814 9 57681798 to 57681809 11 - TSS region transcription start site region 89814
Tssr89815 9 57681904 to 57681914 10 - TSS region transcription start site region 89815
Tssr89816 9 57682022 to 57682032 10 - TSS region transcription start site region 89816
Tssr89817 9 57682206 to 57682216 10 - TSS region transcription start site region 89817
Tssr89818 9 57683644 to 57683663 19 - TSS region transcription start site region 89818
D9Mit21 9 57684209 to 57684399 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 21
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Cyp1a1 9 57687928 to 57703824 15896 + protein coding gene cytochrome P450, family 1, subfamily a, polypeptide 1
Cpgi21830 9 57696206 to 57697192 986 CpG island CpG island 21830
Tssr85322 9 57697612 to 57697616 4 + TSS region transcription start site region 85322
D9Mit28 9 57699693 to 57699838 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 28
Cpgi21831 9 57708391 to 57709331 940 CpG island CpG island 21831
Tssr85323 9 57708534 to 57708608 74 + TSS region transcription start site region 85323
Edc3 9 57708555 to 57750167 41612 + protein coding gene enhancer of mRNA decapping 3
Tssr2887 9 57708616 to 57708626 10 + TSS region transcription start site region 2887
Tssr85324 9 57708631 to 57708661 30 + TSS region transcription start site region 85324
Clk3 9 57750709 to 57765860 15151 - protein coding gene CDC-like kinase 3
Tssr89819 9 57756288 to 57756292 4 - TSS region transcription start site region 89819
Tssr89820 9 57761922 to 57761925 3 - TSS region transcription start site region 89820
Tssr89821 9 57761938 to 57761956 18 - TSS region transcription start site region 89821
Tssr89822 9 57761968 to 57761980 12 - TSS region transcription start site region 89822