Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:56139285-56340751

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tspan3 9 56135884 to 56161070 25186 - protein coding gene tetraspanin 3
Tssr89692 9 56139384 to 56139385 1 - TSS region transcription start site region 89692
Tssr89693 9 56145276 to 56145284 8 - TSS region transcription start site region 89693
Tssr2881 9 56146119 to 56146120 1 + TSS region transcription start site region 2881
Tssr89694 9 56155862 to 56155864 2 - TSS region transcription start site region 89694
Tssr2882 9 56160179 to 56160183 4 + TSS region transcription start site region 2882
Cpgi21793 9 56160286 to 56161201 915 CpG island CpG island 21793
Tssr89695 9 56160940 to 56160968 28 - TSS region transcription start site region 89695
Tssr89696 9 56160998 to 56161045 47 - TSS region transcription start site region 89696
Tssr89697 9 56161051 to 56161075 24 - TSS region transcription start site region 89697
Tssr2883 9 56161092 to 56161097 5 - TSS region transcription start site region 2883
Tssr85249 9 56166443 to 56166453 10 + TSS region transcription start site region 85249
Peak1 9 56201126 to 56418067 216941 - protein coding gene pseudopodium-enriched atypical kinase 1
Tssr89698 9 56201708 to 56201712 4 - TSS region transcription start site region 89698
Tssr89699 9 56202103 to 56202114 11 - TSS region transcription start site region 89699
Cpgi21794 9 56223568 to 56224016 448 CpG island CpG island 21794
Gm24270 9 56223715 to 56223771 56 - miRNA gene predicted gene, 24270
Gm29322 9 56239285 to 56240751 1466 - sense intronic lncRNA gene predicted gene 29322
Tssr89700 9 56244035 to 56244047 12 - TSS region transcription start site region 89700
Tssr89701 9 56244050 to 56244099 49 - TSS region transcription start site region 89701
Tssr85250 9 56248867 to 56248873 6 + TSS region transcription start site region 85250
Tssr85251 9 56257479 to 56257517 38 + TSS region transcription start site region 85251
Peak1os 9 56257890 to 56267780 9890 + antisense lncRNA gene pseudopodium-enriched atypical kinase 1, opposite strand
Tssr89702 9 56259148 to 56259176 28 - TSS region transcription start site region 89702
Gm37842 9 56263599 to 56265167 1568 + unclassified gene predicted gene, 37842
Tssr89703 9 56266417 to 56266423 6 - TSS region transcription start site region 89703
D9Mit142 9 56290406 to 56290587 181 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 142
Tssr89704 9 56324398 to 56324403 5 - TSS region transcription start site region 89704