MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 9:55475090-55705092

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Etfa	9	55454508 to 55512243	57735	-	protein coding gene	electron transferring flavoprotein, alpha polypeptide
Tssr89680	9	55478872 to 55478878	6	-	TSS region	transcription start site region 89680
Cpgi21785	9	55511543 to 55512579	1036		CpG island	CpG island 21785
Tssr89681	9	55512156 to 55512230	74	-	TSS region	transcription start site region 89681
Gm5917	9	55518569 to 55519289	720	+	pseudogene	predicted gene 5917
Isl2	9	55538672 to 55546180	7508	+	protein coding gene	insulin related protein 2 (islet 2)
Gm17226	9	55539549 to 55540888	1339	-	antisense lncRNA gene	predicted gene 17226
Cpgi21786	9	55539652 to 55540024	372		CpG island	CpG island 21786
Cpgi21787	9	55540673 to 55541286	613		CpG island	CpG island 21787
Tssr89682	9	55540893 to 55540925	32	-	TSS region	transcription start site region 89682
Tssr85221	9	55541190 to 55541209	19	+	TSS region	transcription start site region 85221
Cpgi21788	9	55541629 to 55543168	1539		CpG island	CpG island 21788
Cpgi21789	9	55543759 to 55544519	760		CpG island	CpG island 21789
Cpgi21790	9	55544966 to 55546753	1787		CpG island	CpG island 21790
Scaper	9	55549879 to 55938119	388240	-	protein coding gene	S phase cyclin A-associated protein in the ER
Gm23407	9	55555622 to 55555712	90	-	snRNA gene	predicted gene, 23407
Tssr89683	9	55590090 to 55590092	2	-	TSS region	transcription start site region 89683
Gm18102	9	55624648 to 55625267	619	+	pseudogene	predicted gene, 18102