Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:48739608-53934418

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587 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Zbtb16 9 48654297 to 48836222 181925 - protein coding gene zinc finger and BTB domain containing 16
Tssr89410 9 48740701 to 48740704 3 - TSS region transcription start site region 89410
Adip20b 9 48789608 to 53884418 5094810 QTL adiposity 20b
Tssr89411 9 48793965 to 48793969 4 - TSS region transcription start site region 89411
Tssr84996 9 48798330 to 48798335 5 + TSS region transcription start site region 84996
Tssr89412 9 48799664 to 48799669 5 - TSS region transcription start site region 89412
Tssr89413 9 48808216 to 48808225 9 - TSS region transcription start site region 89413
Tssr84997 9 48817577 to 48817582 5 + TSS region transcription start site region 84997
Tssr89414 9 48822098 to 48822101 3 - TSS region transcription start site region 89414
Cpgi21717 9 48834521 to 48836680 2159 CpG island CpG island 21717
Tssr89415 9 48835908 to 48835922 14 - TSS region transcription start site region 89415
Tssr89416 9 48835932 to 48835962 30 - TSS region transcription start site region 89416
Tssr89417 9 48836179 to 48836200 21 - TSS region transcription start site region 89417
Tssr89418 9 48836201 to 48836259 58 - TSS region transcription start site region 89418
Tssr89419 9 48836324 to 48836357 33 - TSS region transcription start site region 89419
Cpgi21718 9 48896317 to 48896500 183 CpG island CpG island 21718
Gm32335 9 48896451 to 48905982 9531 + antisense lncRNA gene predicted gene, 32335
Htr3a 9 48899213 to 48911099 11886 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3A
Tssr89420 9 48910920 to 48910946 26 - TSS region transcription start site region 89420
Tssr89421 9 48911067 to 48911078 11 - TSS region transcription start site region 89421
Tssr89422 9 48911120 to 48911140 20 - TSS region transcription start site region 89422
Htr3b 9 48935008 to 48964990 29982 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3B
Cpgi21719 9 48984777 to 48985990 1213 CpG island CpG island 21719
Tssr84998 9 48985358 to 48985451 93 + TSS region transcription start site region 84998
Usp28 9 48985375 to 49042517 57142 + protein coding gene ubiquitin specific peptidase 28
Tssr84999 9 48985467 to 48985478 11 + TSS region transcription start site region 84999
Tssr85000 9 48987428 to 48987436 8 + TSS region transcription start site region 85000
Tssr85001 9 48991987 to 48992005 18 + TSS region transcription start site region 85001
Tssr85002 9 49002585 to 49002588 3 + TSS region transcription start site region 85002
Tssr85003 9 49028128 to 49028140 12 + TSS region transcription start site region 85003
Tssr85004 9 49030876 to 49030883 7 + TSS region transcription start site region 85004
Tssr85005 9 49037281 to 49037283 2 + TSS region transcription start site region 85005
Cldn25-ps 9 49047676 to 49048267 591 - pseudogene claudin 25, pseudogene
1700042D02Rik 9 49051335 to 49055465 4130 - lincRNA gene RIKEN cDNA 1700042D02 gene
Cpgi21720 9 49055441 to 49056112 671 CpG island CpG island 21720
Tssr89423 9 49055486 to 49055497 11 - TSS region transcription start site region 89423
Tssr85006 9 49055574 to 49055629 55 + TSS region transcription start site region 85006
Zw10 9 49055613 to 49078775 23162 + protein coding gene zw10 kinetochore protein
Tssr85007 9 49055635 to 49055682 47 + TSS region transcription start site region 85007
Tssr89424 9 49079358 to 49079378 20 - TSS region transcription start site region 89424
Tmprss5 9 49081260 to 49117587 36327 + protein coding gene transmembrane protease, serine 5 (spinesin)
D9Mit99 9 49095649 to 49095834 185 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 99
Tssr85008 9 49102720 to 49102752 32 + TSS region transcription start site region 85008
Tssr85009 9 49108662 to 49108665 3 + TSS region transcription start site region 85009
Tssr89425 9 49148127 to 49148141 14 - TSS region transcription start site region 89425
Tssr2864 9 49222172 to 49222176 4 + TSS region transcription start site region 2864
D9Mit315 9 49227794 to 49227912 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-315
Tssr85010 9 49250485 to 49250532 47 + TSS region transcription start site region 85010
Gm4894 9 49250531 to 49280594 30063 + protein coding gene predicted gene 4894
Cpgi21721 9 49340126 to 49341228 1102 CpG island CpG island 21721
Tssr85011 9 49340353 to 49340363 10 + TSS region transcription start site region 85011
Tssr85012 9 49340383 to 49340386 3 + TSS region transcription start site region 85012
Tssr85013 9 49340387 to 49340408 21 + TSS region transcription start site region 85013
Drd2 9 49340627 to 49408177 67550 + protein coding gene dopamine receptor D2
Gm46112 9 49404408 to 49407370 2962 - lncRNA gene predicted gene, 46112
Gm46111 9 49407421 to 49410846 3425 - lncRNA gene predicted gene, 46111
Tssr89426 9 49410834 to 49410853 19 - TSS region transcription start site region 89426
Ankk1 9 49415194 to 49427021 11827 - protein coding gene ankyrin repeat and kinase domain containing 1
Ttc12 9 49436963 to 49486225 49262 - protein coding gene tetratricopeptide repeat domain 12
Tssr89427 9 49474426 to 49474440 14 - TSS region transcription start site region 89427
Cpgi21722 9 49485902 to 49486448 546 CpG island CpG island 21722
Tssr89428 9 49486166 to 49486189 23 - TSS region transcription start site region 89428
Tssr89429 9 49486191 to 49486202 11 - TSS region transcription start site region 89429
Tssr89430 9 49486209 to 49486230 21 - TSS region transcription start site region 89430
4921518B13Rik 9 49488658 to 49490361 1703 unclassified gene RIKEN cDNA 4921518B13 gene
Tssr89431 9 49490331 to 49490363 32 - TSS region transcription start site region 89431
Ncam1 9 49502136 to 49798925 296789 - protein coding gene neural cell adhesion molecule 1
Tssr89432 9 49503778 to 49503790 12 - TSS region transcription start site region 89432
Tssr89433 9 49504061 to 49504076 15 - TSS region transcription start site region 89433
Tssr89434 9 49504138 to 49504160 22 - TSS region transcription start site region 89434
Tssr89435 9 49504311 to 49504325 14 - TSS region transcription start site region 89435
Tssr89436 9 49504745 to 49504757 12 - TSS region transcription start site region 89436
Tssr89437 9 49504963 to 49504980 17 - TSS region transcription start site region 89437
D9Mit98 9 49505060 to 49505407 347 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 98
Tssr89438 9 49505154 to 49505175 21 - TSS region transcription start site region 89438
Tssr89439 9 49505197 to 49505225 28 - TSS region transcription start site region 89439
Tssr85014 9 49505264 to 49505275 11 + TSS region transcription start site region 85014
Tssr89440 9 49505373 to 49505414 41 - TSS region transcription start site region 89440
Tssr89441 9 49505433 to 49505458 25 - TSS region transcription start site region 89441
Tssr89442 9 49505486 to 49505511 25 - TSS region transcription start site region 89442
Tssr89443 9 49505514 to 49505533 19 - TSS region transcription start site region 89443
Tssr89444 9 49505544 to 49505556 12 - TSS region transcription start site region 89444
Tssr89445 9 49506901 to 49506931 30 - TSS region transcription start site region 89445
Tssr89446 9 49506937 to 49506972 35 - TSS region transcription start site region 89446
Tssr89447 9 49508625 to 49508641 16 - TSS region transcription start site region 89447
D9Mit22 9 49508998 to 49509211 213 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 22
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
D9Nds6 9 49509032 to 49509223 191 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 6
Tssr89448 9 49509808 to 49509839 31 - TSS region transcription start site region 89448
Tssr89449 9 49509857 to 49509916 59 - TSS region transcription start site region 89449
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
D9Mit299 9 49514376 to 49514460 84 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 299
Tssr89450 9 49515263 to 49515266 3 - TSS region transcription start site region 89450
Tssr89451 9 49517559 to 49517578 19 - TSS region transcription start site region 89451
Gm11149 9 49518288 to 49568025 49737 + antisense lncRNA gene predicted gene 11149
Tssr85015 9 49518312 to 49518332 20 + TSS region transcription start site region 85015
Tssr85016 9 49518337 to 49518340 3 + TSS region transcription start site region 85016
Actd4 9 49523263 to 49523557 294 QTL activity-distance traveled 4
D9Mit94 9 49523263 to 49523557 294 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 94
Tssr89452 9 49529524 to 49529535 11 - TSS region transcription start site region 89452
D9Mit229 9 49541121 to 49541246 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 229
Cq5 9 49541121 to 49541246 125 QTL cholesterol QTL 5
Tssr89453 9 49554512 to 49554529 17 - TSS region transcription start site region 89453
Tssr89454 9 49554575 to 49554596 21 - TSS region transcription start site region 89454
Tssr85017 9 49559225 to 49559228 3 + TSS region transcription start site region 85017
Tssr89455 9 49568469 to 49568505 36 - TSS region transcription start site region 89455
Tssr89456 9 49568518 to 49568533 15 - TSS region transcription start site region 89456
Tssr89457 9 49570824 to 49570850 26 - TSS region transcription start site region 89457
D9Mit171 9 49599872 to 49600121 249 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 171
Hts 9 49599872 to 49600121 249 QTL hypothermia sensitivity
Tssr89458 9 49630289 to 49630292 3 - TSS region transcription start site region 89458
Tssr89459 9 49673942 to 49673944 2 - TSS region transcription start site region 89459
Tssr89460 9 49714158 to 49714169 11 - TSS region transcription start site region 89460
Tssr89461 9 49715960 to 49715987 27 - TSS region transcription start site region 89461
Tssr89462 9 49716058 to 49716079 21 - TSS region transcription start site region 89462
Tssr89463 9 49718740 to 49718745 5 - TSS region transcription start site region 89463
Tssr89464 9 49756422 to 49756425 3 - TSS region transcription start site region 89464
Tssr89465 9 49765917 to 49765921 4 - TSS region transcription start site region 89465
D9Mit46 9 49782040 to 49782153 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 46
Tssr89466 9 49794457 to 49794461 4 - TSS region transcription start site region 89466
Cpgi21723 9 49796656 to 49799162 2506 CpG island CpG island 21723
Tssr89467 9 49798821 to 49798855 34 - TSS region transcription start site region 89467
Tssr89468 9 49798905 to 49798931 26 - TSS region transcription start site region 89468
Tssr2865 9 49798947 to 49798958 11 - TSS region transcription start site region 2865
Gm25633 9 49825869 to 49825975 106 - snRNA gene predicted gene, 25633
D9Mit131.1 9 49912510 to 49912656 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.1
D9Mit131 9 49912652 to 49912799 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131
D9Mit131.2 9 49912746 to 49912855 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.2
Tssr85018 9 49954868 to 49954891 23 + TSS region transcription start site region 85018
Gm47543 9 49954878 to 49956554 1676 + lincRNA gene predicted gene, 47543
Tssr85019 9 49954893 to 49954900 7 + TSS region transcription start site region 85019
Tssr85020 9 49954902 to 49954911 9 + TSS region transcription start site region 85020
D9Mit162.1 9 49978195 to 49978395 200 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162.1
D9Mit162 9 49978402 to 49978536 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162
Ptnu3 9 49978402 to 49978536 134 QTL proteinuria 3
Tssr89469 9 50124332 to 50124346 14 - TSS region transcription start site region 89469
Gm8907 9 50186043 to 50187045 1002 - pseudogene predicted gene 8907
Si5lq3 9 50199725 to 50199840 115 QTL serum IGFBP-5 level QTL 3
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
D9Mit71 9 50199725 to 50199840 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 71
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Gm4042 9 50215088 to 50215714 626 + pseudogene predicted gene 4042
2310003N18Rik 9 50232523 to 50233182 659 - lincRNA gene RIKEN cDNA 2310003N18 gene
Tssr89470 9 50233180 to 50233184 4 - TSS region transcription start site region 89470
Gm40519 9 50233531 to 50241316 7785 - lncRNA gene predicted gene, 40519
Tssr85021 9 50239730 to 50239731 1 + TSS region transcription start site region 85021
D9Mit288 9 50291649 to 50291745 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 288
Gm39336 9 50300784 to 50301817 1033 - lincRNA gene predicted gene, 39336
Rpl10-ps3 9 50344226 to 50344984 758 - pseudogene ribosomal protein L10, pseudogene 3
Tssr89471 9 50344982 to 50344984 2 - TSS region transcription start site region 89471
Gm38579 9 50390839 to 50392388 1549 - lncRNA gene predicted gene, 38579
D9Mit172 9 50401590 to 50401731 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 172
Tssr89472 9 50430282 to 50430294 12 - TSS region transcription start site region 89472
Tssr89473 9 50430354 to 50430371 17 - TSS region transcription start site region 89473
Tssr89474 9 50447899 to 50447921 22 - TSS region transcription start site region 89474
Gm32462 9 50472164 to 50486100 13936 - lncRNA gene predicted gene, 32462
Tssr89475 9 50475709 to 50475727 18 - TSS region transcription start site region 89475
Tssr85022 9 50479125 to 50479127 2 + TSS region transcription start site region 85022
Tssr89476 9 50479529 to 50479538 9 - TSS region transcription start site region 89476
Tssr89477 9 50479582 to 50479592 10 - TSS region transcription start site region 89477
Gm9557 9 50484368 to 50485849 1481 + pseudogene predicted gene 9557
Plet1os 9 50488799 to 50504805 16006 - antisense lncRNA gene placenta expressed transcript 1, opposite strand
Tssr2866 9 50494048 to 50494057 9 + TSS region transcription start site region 2866
Tssr85023 9 50494139 to 50494146 7 + TSS region transcription start site region 85023
Tssr85024 9 50494233 to 50494272 39 + TSS region transcription start site region 85024
Tssr85025 9 50494516 to 50494533 17 + TSS region transcription start site region 85025
Plet1 9 50494525 to 50505482 10957 + protein coding gene placenta expressed transcript 1
Tssr85026 9 50496776 to 50496801 25 + TSS region transcription start site region 85026
Cpgi21724 9 50498898 to 50499144 246 CpG island CpG island 21724
Tssr85027 9 50499144 to 50499164 20 + TSS region transcription start site region 85027
Tssr85028 9 50499174 to 50499186 12 + TSS region transcription start site region 85028
Tssr85029 9 50499209 to 50499222 13 + TSS region transcription start site region 85029
Tssr85030 9 50499254 to 50499266 12 + TSS region transcription start site region 85030
Tssr85031 9 50501065 to 50501091 26 + TSS region transcription start site region 85031
Tssr85032 9 50504286 to 50504297 11 + TSS region transcription start site region 85032
Tssr85033 9 50504305 to 50504346 41 + TSS region transcription start site region 85033
Tssr85034 9 50504349 to 50504367 18 + TSS region transcription start site region 85034
Tssr85035 9 50504552 to 50504566 14 + TSS region transcription start site region 85035
Tssr89478 9 50504779 to 50504821 42 - TSS region transcription start site region 89478
Tssr85036 9 50506395 to 50506398 3 + TSS region transcription start site region 85036
Tssr89479 9 50507754 to 50507765 11 - TSS region transcription start site region 89479
Pts 9 50521617 to 50528641 7024 - protein coding gene 6-pyruvoyl-tetrahydropterin synthase
Cpgi21725 9 50528213 to 50528876 663 CpG island CpG island 21725
Tssr89480 9 50528642 to 50528698 56 - TSS region transcription start site region 89480
Tssr85037 9 50528743 to 50528773 30 + TSS region transcription start site region 85037
Gm47077 9 50528767 to 50533752 4985 + antisense lncRNA gene predicted gene, 47077
Bco2 9 50533087 to 50555181 22094 - protein coding gene beta-carotene oxygenase 2
D9Mit70 9 50550846 to 50551009 163 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70
D9Mit70.1 9 50550899 to 50551028 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70.1
Il18 9 50554827 to 50581840 27013 + protein coding gene interleukin 18
Tssr85038 9 50554833 to 50554848 15 + TSS region transcription start site region 85038
Tssr85039 9 50554863 to 50554948 85 + TSS region transcription start site region 85039
Tssr89481 9 50555127 to 50555151 24 - TSS region transcription start site region 89481
Tssr89482 9 50555170 to 50555183 13 - TSS region transcription start site region 89482
Tex12 9 50557148 to 50561268 4120 - protein coding gene testis expressed 12
Cpgi21726 9 50560966 to 50561686 720 CpG island CpG island 21726